KEGG   Thermobaculum terrenum: Tter_1339
Entry
Tter_1339         CDS       T01134                                 
Name
(GenBank) transcription termination factor Rho
  KO
K03628  transcription termination factor Rho
Organism
ttr  Thermobaculum terrenum
Pathway
ttr03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:ttr00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    Tter_1339
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:ttr03021]
    Tter_1339
   03019 Messenger RNA biogenesis [BR:ttr03019]
    Tter_1339
Transcription machinery [BR:ttr03021]
 Prokaryotic type
  Bacterial type
   Other transcription-related factors
    Transcription termination factor
     Tter_1339
Messenger RNA biogenesis [BR:ttr03019]
 Prokaryotic type
  Bacterial mRNA degradation factors
   RNA degradosome components
    Other RNA degradosome components
     Tter_1339
SSDB
Motif
Pfam: Rho_RNA_bind ATP-synt_ab Rho_N OB_RNB Spore_III_AA ATPase_2 NACHT AAA
Other DBs
NCBI-ProteinID: ACZ42246
UniProt: D1CBT1
Position
1:1447092..1449020
AA seq 642 aa
MDNTKNQELERNSEEIATTTITEIPADTRASDPQQSQQAHDTDKQPSDQIASDNVEPGNV
TSEKSSEDQLELPISEQRVENTPEVATEVPTSQQSSMHTQGDNSSNSKQADTSVVTEQSA
EPDPPVAEVTKVAEVGQQEEQAEHREDAAQEPSSTTTVAEEATSEAATPPEVDKAEEKPS
SKRSKKKPKQNNGRNGNNQQERTNGNNTAVAVAKKPSNETETVQAPTFTFAELQSMTKTN
LLALGRSLEVEVSGSMTKETLIYKILEAQANRAGYLLKQGILDIIEDGFGFLRQERYLPS
PDDVYVSQSQIRRFGLRTGDHVIGQVRAPKDNEKYHSLLRVEAVNYMDPEAARKRPFFDQ
LTPIFPNRQLVLETTPKQLSTRLIDLVAPIGRGQRGLIVSPPKAGKTTLLKDIANGITHN
YDDVHLMMLLIGERPEEVTDIRRSVEGEVVASTFDEPVEDHTKVAEMALERAKRLVECGK
DVVILMDSITRLARAYNLVVPASGRTLSGGIDPVALYPPKRFFGAARNIDEGGSLTIIAT
CLIDTGSRMDDVIYEEFKGTGNMELHLDRKLQERRIFPAIDVQRSGTRREELLIPEPKLQ
KIWTMRRMVSMLGGLEGTELLLNRLAKTENNEEFLNTLNKEL
NT seq 1929 nt   +upstreamnt  +downstreamnt
atggataacactaaaaatcaagaactagaaaggaacagcgaagagatcgcaaccacaacg
attacagaaattccagcagatacgagagcatcagaccctcagcaaagccaacaagcgcac
gatacagataagcagccatcagatcagatagcaagcgacaacgtagagcccggtaatgta
acttcagagaaatcatcagaagatcaacttgaacttcctatatctgaacagagagttgag
aatacccctgaagtcgcgacagaagtgcctaccagccagcaaagcagcatgcatactcaa
ggagataattcttccaatagtaaacaagcagatacctcagttgttaccgaacaatcggcc
gagcctgatcccccagttgctgaggtaacaaaagtagctgaagtcgggcaacaggaggag
caagccgaacacagggaagatgcagctcaggagccttcctcgacaacaactgtggcagag
gaagctacctccgaagcagcaactcctccagaggtggataaggcggaagaaaagccgagt
agcaagaggtcgaagaagaagccaaagcagaataacggtcggaacgggaacaaccagcag
gaaaggacgaatggtaacaacacggcagttgccgtggccaagaagccttctaacgagaca
gaaaccgttcaggctcccaccttcacctttgcagagctacagagtatgaccaagactaac
ctgcttgccctgggcagaagcctggaagtcgaagtctcaggcagcatgaccaaggagacc
ctgatctataagatactggaagcccaagccaaccgcgctggttatctgctgaagcagggc
attctggatatcatagaagacggcttcggatttctcaggcaggagaggtatctgccttct
ccagatgatgtgtacgtctcacaatctcagattcgtagatttgggctccgtactggcgac
cacgtaataggtcaggttagggctccaaaggacaacgaaaagtatcactccctgctcagg
gtggaagccgtaaactatatggacccagaggccgcacgaaagcgcccatttttcgaccag
ctaacgcccatcttccctaaccggcagctggtccttgagactaccccgaagcaacttagc
actaggcttatagatctggtagcaccaataggtaggggccagcgtggccttatagtatca
ccgcccaaggcaggtaagaccacgctactcaaggacatcgccaacggcataactcacaac
tacgatgatgttcacctcatgatgctcctgataggtgagcgccctgaggaggttacagat
atccgtagatcggtagagggagaggtcgtagcaagcacctttgatgagcccgttgaggac
cacaccaaggtcgctgagatggctcttgagcgagccaagcgtctggttgagtgtgggaaa
gacgtagtgatactcatggacagtatcaccaggctggcaagggcctataacctggtagta
cccgcaagcggcagaacgctctcaggtggcatagatcccgtagccctgtatcctcccaag
agattcttcggagcggccagaaacatagacgaaggcgggagcctcacaataatagccaca
tgcttaatagataccggtagccgtatggacgatgtgatctatgaagagttcaaaggtact
ggtaacatggagctccacttggatcgcaagctccaagagagaaggatattcccagctata
gatgtgcaacggagcggtaccagaagagaagaactgctcatacctgagccaaagctgcag
aagatctggactatgcgcaggatggtaagtatgctagggggacttgaaggtaccgaactc
ctcctgaaccgcctggcaaagaccgaaaacaacgaggaattcctgaataccctcaataag
gagctttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (48)   
   KEGG ORTHOLOGY (1)   
   RefGene (45)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (8)   
   Pfam (8)   
All databases (62)   

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