KEGG   Tupaia chinensis (Chinese tree shrew): 102499329
Entry
102499329         CDS       T02978                                 
Symbol
SNRNP200
Name
(RefSeq) small nuclear ribonucleoprotein U5 subunit 200
  KO
K12854  pre-mRNA-splicing helicase BRR2 [EC:5.6.2.6]
Organism
tup  Tupaia chinensis (Chinese tree shrew)
Pathway
tup03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tup00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    102499329 (SNRNP200)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:tup03041]
    102499329 (SNRNP200)
Enzymes [BR:tup01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.6  RNA 3'-5' helicase
     102499329 (SNRNP200)
Spliceosome [BR:tup03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U5 snRNP specific factors
    102499329 (SNRNP200)
 Complex C
   U5 SnRNP specific factors
    102499329 (SNRNP200)
SSDB
Motif
Pfam: Sec63 DEAD Helicase_PWI ResIII Helicase_C BRR2_plug AAA_22 AAA_30 PhoH SWI2_SNF2 Sigma54_activ_2 DUF603
Other DBs
NCBI-GeneID: 102499329
NCBI-ProteinID: XP_006166616
Position
Un
AA seq 2136 aa
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTRMGDKAQRTK
PQMQEERRAKRRKRDEDRHDINKMKGYTLLSEGIDEMVGIIYKPKTKETRETYEVLLSFI
QAALGDQPRDILCGAADEVLAVLKNEKLRDKERRKEIDLLLGQTDDTRYHVLVNLGKKIT
DYGGDKEIQNMDDNIDETYGVNVQFESDEEEGDEDVYGEVREEASDDDMEGDEAVVRCTL
SANLVASGELMSSKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKVLRQHRMMILYCTLLASAQSEAEKERIMGKMEADPELSKFL
YQLHETEKEDLIREERSRRERVRQSRMDTDLETMDLDQGGEALAPRQVLDLEDLVFTQGS
HFMANKRCQLPDGSFRRQRKGYEEVHVPALKPKPFGSEEQLLPVEKLPKYAQAGFEGFKT
LNRIQSKLYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIY
IAPMRSLVQEMVGSFGKRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKG
GERTYTQLVRLIILDEIHLLHDDRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPNYED
VATFLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQ
VLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPY
GFAIHHAGMTRVDRTLVEDLFADKHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGR
WTELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDM
LNAEIVLGNVQNAKDAVNWLGYAYLYIRMLRSPTLYGISHDDLKGDPLLDQRRLDLVHTA
ALMLDKNNLVKYDKKTGNFQVTELGRIASHYYITNDTVQTYNQLLKPTLSEIELFRVFSL
SSEFKNITVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAFISQLKLEGFALMAD
MVYVTQSAGRLMRAIFEIVLNRGWAQLTDKTLNLCKMIDKRMWQSMCPLRQFRKLPEEVV
KKIEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHLFPKLELSVHLQPITRSTLKV
ELTITPDFQWDEKVHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLITFFVPVFE
PLPPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVSALRNSAFESL
YQDKFPFFNPIQTQVFNTVYNSDDNVFVGAPTGSGKTICAEFAILRMLLQNSEGRCVYIT
PMEALAEQVYMDWYEKFQDRLSKKVVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWK
QRKNVQNINLFVVDEVHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDV
AHWLGCSATSTFNFHPNVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVI
VFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLKETLLNGVGYL
HEGLSPMERRLVEQLFSSGAIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDYP
IYDVLQMVGHANRPLQDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCMHDHFNAEI
VTKTIENKQDAVDYLTWTFLYRRMTQNPNYYNLQGISHRHLSDHLSELVEQTLSDLEQSK
CISIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKVRGLIEIISNAAEYENIPI
RHHEDNLLRQLAQKVPHKLNNPKFNDPHVKTNLLLQAHLSRMQLSAELQSDTEEILSKAI
RLIQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPHFTSEHIKRCTDKGVE
SVFDIMEMEDEERNGLLQLTDSQIADVARFCNRYPNIELSYEVVDKDSIRSGGPVVVLVQ
LEREEEVTGPVIAPLFPQKREEGWWVVIGDAKSNSLISIKRLTLQQKAKVKLDFVAPATG
AHNYTLYFMSDAYMGCDQEYKFSVDVKEAETDSDSD
NT seq 6411 nt   +upstreamnt  +downstreamnt
atggcggacgtgaccgcccggagcctgcagtacgagtacaaggcgaactccaatcttgtg
ctccaagctgaccgctctcttattgaccggacccgccgagatgaacccacaggagaggtg
ctgtctctggttgggaagttggagggcacccgtatgggagataaggcccaacggaccaaa
ccccagatgcaagaggaaagaagagccaagcgaagaaagcgtgatgaagaccggcacgac
atcaacaagatgaagggttacactctcctgtcagagggcatcgatgagatggtgggcatc
atctataagcccaaaaccaaggagacacgagagacctacgaggtgctgctcagctttatc
caggctgcccttggggaccagccacgtgatatcctgtgtggggcagctgacgaagttctt
gctgtcttgaagaatgaaaaactgcgggacaaggaaaggcgaaaggagattgaccttctg
ctgggtcagacagatgataccagataccacgtgctggtgaacttgggcaagaaaatcaca
gactacggcggagacaaggaaatccaaaacatggatgacaacattgatgagacttatggt
gtgaatgtgcagtttgaatctgacgaggaggaaggagatgaagatgtgtacggggaggtt
cgagaagaggcatcggatgatgacatggaaggggatgaagctgttgtgcgctgcaccctc
tcggctaatcttgtagcctcaggtgagctgatgagttccaagaagaaggacttgcaccct
cgcgacattgatgcgttttggctacagcggcagctcagtcgtttctacgatgatgctatc
gtgtcgcagaagaaggcagatgaagtcttggagatcttgaagacagccagtgatgatcga
gagtgtgagaaccagctggtcctgcttctgggtttcaacacctttgactttatcaaagtt
ttgcggcagcataggatgatgattttgtactgtaccttgctggccagcgcacagagtgaa
gctgaaaaggaaagaatcatgggaaagatggaagcagatccagagctgtccaagttcctc
taccagctccatgaaactgagaaggaggatctgatccgagaggagcggtctcggagagag
cgagtgcggcagtcccgaatggacacggacctggaaaccatggacctggaccaaggagga
gaggccctggctccacggcaggtcctggatttggaagacctggtttttacccaagggagc
cacttcatggccaataaacgttgtcagcttcctgacggatccttccgtcgccagcggaag
ggctatgaagaggtgcatgtgcctgctctaaagcccaagcccttcggctcagaagaacaa
ctgcttccggtggagaagttgccgaagtatgcccaggctggatttgagggcttcaaaact
ctgaatcggatccagagtaaactctaccgtgctgccttagagacggatgagaacctgctg
ttgtgtgctcctacgggtgcagggaagaccaacgtggccctgatgtgcatgctccgggag
atagggaaacacatcaacatggacggcaccatcaacgtggacgacttcaagattatctac
atcgctcccatgcggtccttggtgcaggagatggtcggcagctttgggaagcgcctagcc
acctacggcatcaccgtcgctgaactgacgggggaccaccagctgtgcaaggaagagatc
agcgccacccagatcatcgtctgcaccccagagaagtgggacatcattacccgcaagggc
ggcgagcgcacctacacccagctggtgcggctcatcatcctggatgagattcatcttctc
catgatgacagaggtcccgtcttagaagctttggtggccagggctatccggaatattgaa
atgacccaagaggatgtcagactcattggtcttagtgccaccctccccaactatgaagat
gtggccaccttcctgcgtgttgacccagccaagggcctcttctactttgacaacagcttc
cgcccagtgcctctggagcagacatatgtgggcatcacagagaaaaaagctatcaagcgc
ttccagatcatgaatgaaatagtctatgagaaaatcatggaacatgctggaaaaaatcag
gtgctggtgttcgtccactccaggaaggaaactgggaagacagccagggccatccgagac
atgtgcttagagaaagacaccctgggcctgtttctgagagaaggctccgcttccacagaa
gtccttcggacagaagctgagcagtgcaagaacctggagctcaaggaccttctgccctat
ggctttgctattcaccacgcaggcatgaccagagttgacaggacgctcgtggaggatctt
tttgctgacaaacatattcaggttttagtttccacagcaactctggcatggggtgtgaat
ctccctgcacacacggtcatcatcaaaggcacccaagtgtacagtccagagaaggggcgc
tggacagaactgggcgcgctggacatcctgcagatgctgggacgtgctggccggccccag
tatgacactaagggcgaaggcattctcatcacctctcacggggagctgcagtactacctg
tccctgctcaatcagcagctgcctattgagagccagatggtgtcgaagcttcccgacatg
ctcaacgccgaaatcgtgctggggaatgtccagaatgcaaaggacgcagtgaactggctg
ggctatgcctacctgtacatccgaatgcttcgatccccaaccctctatggcatctcccac
gatgacctcaaaggagatcccctgctggaccagcgccgactagatctggtccacactgca
gccctgatgctggacaagaacaatctggtcaagtacgacaagaagaccggcaacttccag
gtgacagaactgggccgcatagccagccactactacatcaccaatgacacggtgcagacc
tacaaccagctgctgaagcccaccctgagtgagatcgagctcttcagagtcttctcattg
tcctcggagttcaagaacatcactgtgagagaggaggagaagctggagctgcagaaattg
ctggagagagtgcccatccccgtaaaggagagcatcgaggagccgagcgcgaagattaac
gtgctccttcaagccttcatctcgcagctgaaactggagggcttcgcactaatggctgac
atggtgtatgtgacgcagtctgctggccggttgatgcgtgcaatctttgaaattgtcttg
aaccgaggttgggcacagcttacggacaagaccctgaacctctgcaagatgatcgacaaa
cgcatgtggcagtccatgtgtcctctacgccagttccggaagctccccgaggaagtagta
aagaagattgagaagaaaaatttccccttcgagcgtctctatgacctgaatcacaatgag
ataggggagctgatccgcatgccgaagatgggcaagactatccacaagtacgtccacctg
ttccctaagttggagctgtcggtgcacctgcagcccatcacacgctccactctgaaagtg
gagctgaccatcaccccggatttccagtgggacgagaaggttcacggttcatcagaggct
ttctggattctggtggaggacgtggacagtgaggtgattctgcaccacgagtattttctg
ctcaaggccaagtatgcccaggacgagcacctcattaccttcttcgtgcctgtcttcgaa
ccgctgccccctcagtacttcatccgcgtggtgtctgaccgctggctctcttgtgagact
cagctgcctgtctccttccggcacctgatcctaccagagaagtacccgcctccaaccgag
ctcttggacctgcagcccttgcccgtgtctgctctgagaaacagtgcatttgagagcctg
taccaagacaagtttcccttcttcaatcccatccagacccaagtgtttaacaccgtgtac
aacagtgatgacaacgtgtttgtgggggctcccacgggcagcgggaagaccatctgtgcc
gagtttgccatcctgcggatgctgctgcagaactcagaggggcgctgtgtctacatcacc
cccatggaggccctggccgagcaggtatacatggactggtacgagaagttccaggacagg
ctcagcaagaaggtggtgcttctgacaggggagaccagcacagacctgaagcttctgggc
aaaggcaacatcatcatcagcacccctgagaagtgggacatactctcccggcggtggaag
cagcgcaagaacgtgcagaacatcaacctctttgtggtggatgaggtccaccttatcggc
ggcgagaacgggcctgtcttagaagtgatctgctcccgcatgcgctacatctcctctcag
atcgagcggcccatccgcatcgtggcactcagctcctcactctcgaatgctaaggacgtg
gcccactggctgggctgcagtgccacctccactttcaacttccaccctaacgtgcgccct
gtgcccttggagctgcacattcagggcttcaacatcagccacacacagactcgcctgctg
tccatggccaagcccgtgtaccatgctatcaccaagcactcgcccaagaagcctgtcatt
gtttttgtcccatctcgcaagcagacccgcctcaccgccattgacatcctcaccacgtgt
gcagcggatatccagcggcagaggttcttgcactgcaccgagaaggacctgatcccgtac
ctggagaagctcagcgacagcactctcaaggagacgctcttgaacggggtgggctacctg
catgaagggctcagccccatggagcgacgcctggtggagcagctcttcagctcaggagcc
atccaggtggtggtggcttcgcggagtctctgctggggcatgaacgtggctgcccacctg
gtgatcatcatggacacccagtactacaacggcaagatccacgcctatgtggattacccc
atctacgacgtgctccagatggtgggccatgccaaccgccctctgcaggatgacgagggg
cgctgtgtcattatgtgtcagggctccaaaaaggatttcttcaaaaagttcttgtatgag
ccgctgccagtagagtctcacctggaccactgtatgcatgaccacttcaatgctgagatt
gtcaccaagaccattgagaacaagcaggacgcggtggactatctcacctggaccttcctg
taccgccgcatgacacagaaccccaactactacaacctgcagggcatctcccatcgtcac
ttgtccgaccacttgtcagagctggtggagcagaccctgagtgacctggagcagtccaag
tgcatcagcatcgaggacgagatggacgtggcgcctctgaacctgggcatgatcgctgcc
tactattacatcaactacaccaccatcgagctcttcagcatgtccctgaatgccaagacc
aaggtgcgagggctcatcgagatcatctccaacgcagcagagtacgagaacattcccatc
cggcaccatgaggacaacctcctgcggcagttggctcagaaggtccctcacaaactgaat
aatcccaagttcaatgacccacacgtcaagaccaacctgcttctgcaggctcacctgtct
cgcatgcagctgagtgctgagctgcagtcggacacagaggaaatccttagcaaggccatc
cggctcatccaggcctgcgtggatgtcctctccagcaatggctggctcagccctgctctg
gcagccatggagctggcccagatggtcacccaggccatgtggtccaaagactcgtacctg
aagcagctgcctcacttcacttcagagcacatcaaacggtgcacagacaagggagtggag
agtgttttcgacattatggagatggaggatgaagaacgaaatgggctgcttcagctgact
gacagccagattgcggacgtggcccgcttctgtaaccgctaccccaacattgagctgtcc
tacgaagtggtggacaaggacagcatccgcagtggcgggccagtggtggtgcttgtgcag
ctggagcgagaggaggaggtcacagggcccgttatcgcgcctctcttcccacagaaacgt
gaagagggctggtgggtggtgattggagacgccaagtccaacagcctcatctccatcaag
aggctgaccctgcagcagaaggccaaggtgaagctggactttgtggccccagcaactggt
gcccacaactataccctgtacttcatgagtgacgcttacatgggctgtgaccaggagtac
aagttcagtgtggatgtgaaagaagccgagacggacagtgactcagattga

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (20)   
   KEGG ORTHOLOGY (1)   
   RefGene (16)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (1)   
   RefSeq(pep) (1)   
DNA sequence (3)   
   RefSeq(nuc) (1)   
   GenBank (1)   
   EMBL (1)   
Protein domain (12)   
   Pfam (12)   
All databases (41)   

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