KEGG   Thermoproteus uzoniensis: TUZN_0477
Entry
TUZN_0477         CDS       T01460                                 
Name
(GenBank) exosome complex RNA-binding protein Rrp42
  KO
K12589  exosome complex component RRP42
Organism
tuz  Thermoproteus uzoniensis
Pathway
tuz03018  RNA degradation
Brite
KEGG Orthology (KO) [BR:tuz00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   03018 RNA degradation
    TUZN_0477
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tuz03019]
    TUZN_0477
Messenger RNA biogenesis [BR:tuz03019]
 Eukaryotic type
  mRNA degradation factors
   3'-5' decay
    Core exosome factors
     TUZN_0477
 Prokaryotic type
  Archeal mRNA degradation factors
   Exosome components
    Cofactors
     TUZN_0477
SSDB
Motif
Pfam: RNase_PH RNase_PH_C
Other DBs
NCBI-ProteinID: AEA11973
UniProt: F2L3B4
Position
complement(415319..416140)
AA seq 273 aa
MASISPYSKRFISYIRRNQIRRLISSGVRIDGRTPDQLREVSITTNVVNTADGSAEALLG
KTRVVAGVKVGLGQPFPDAPDEGVLIVNAEILPHASPYSEIGPPDETAIELARVVDRGIR
HSGFVDFKKLAIDQNKVYVLWVDLYVLNDDGNLVDAANLAALAALRSTMLPSAVKDETGV
KLDRNNKTALPSDLSKAPIAVSIGKIDNRLIVDPNFEEELSLDGRITVTIAQDSIVSIQK
TMGYFTEQELGQAVDLAYSVRDKFKDILLKSLV
NT seq 822 nt   +upstreamnt  +downstreamnt
atggcgtcaatatcgccctacagcaaacgcttcatctcgtacatacgacgtaaccagata
aggaggcttatatcatcgggcgttaggatagacggcagaacgccggatcagctgagggag
gtatccataacgactaacgtggtcaacacagctgacggatcagcggaagcgttattggga
aagaccagggtcgtggccggggttaaggtcggcctgggccagccgttccccgacgcgcct
gacgagggggtgttgatcgtaaacgccgagatcttgccccacgcatccccctacagcgag
atagggccgccggacgagacggctatagagctcgcccgcgtcgtcgaccgcggcatacgc
cacagcggcttcgtggactttaagaagctggcgatagaccagaacaaggtctacgtactt
tgggtggatctctacgtcctaaacgacgacggcaacctcgtcgacgccgcgaacctcgcc
gctctggccgcgctgagatccaccatgttgccgtcggcggtcaaggacgagacgggggtc
aagttggatagaaataacaagacggcgcttccgtccgatctatccaaggcgccgatagcc
gtctcgatagggaaaatagacaaccgccttatagtggatcccaacttcgaggaggagctc
tcgctggacggccgaataaccgtgaccatagctcaagactccatagtgtctatacagaag
acgatgggctacttcacggaacaagagcttggacaagcggtagatctcgcctactctgtc
agggacaagttcaaagatatattgttgaagagcctggtctag

  All links  
Ontology (2)   
   KEGG BRITE (2)   
Pathway (1)   
   KEGG PATHWAY (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   RefGene (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (11)   

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