KEGG   Trichophyton verrucosum: TRV_05913
Entry
TRV_05913         CDS       T01615                                 
Name
(RefSeq) hypothetical protein
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
tve  Trichophyton verrucosum
Pathway
tve03030  DNA replication
tve03410  Base excision repair
tve03420  Nucleotide excision repair
tve03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:tve00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    TRV_05913
   03410 Base excision repair
    TRV_05913
   03420 Nucleotide excision repair
    TRV_05913
   03430 Mismatch repair
    TRV_05913
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tve03032]
    TRV_05913
   03400 DNA repair and recombination proteins [BR:tve03400]
    TRV_05913
Enzymes [BR:tve01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TRV_05913
    6.5.1.6  DNA ligase (ATP or NAD+)
     TRV_05913
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     TRV_05913
DNA replication proteins [BR:tve03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    TRV_05913
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     TRV_05913
DNA repair and recombination proteins [BR:tve03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     TRV_05913
   NER (nucleotide excision repair)
    Other NER factors
     TRV_05913
   MMR (mismatch excision repair)
    Other MMR factors
     TRV_05913
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C
Other DBs
NCBI-GeneID: 9583799
NCBI-ProteinID: XP_003020049
UniProt: D4DFG3
AA seq 908 aa
MAQKSGGSKQSTLGKFFGSNSNPAPKKQSTLAFSSKSSSSKNDETKEKDDEVAEGAPQTP
QKQVGRAESKRTPPPIDDGDVDGEILSGGEKSESVSPVTRRQKRKEAVAIKGDEESDEQP
VTKRRRRSPKSNTKAKSPVNGGRSKAAATGEQSPTKIKSDAEPEQSSAEENSASEIEEDD
IDDKPAKVQQKKKAAAKQRKQVQSTLTSKPKDLYPDWKAGDPVPYAALCTTFSHIEMTTK
RLIILSHCALFLRQVLRLTPDDLLSTVQLMINKLAADYAGIELGIGESLIMKAIGESTGR
SLAVIKADQNEIGDLGLVAAKSRSNQPTMFKPKALTVRGVHEGLLAIAKTHGTGSQEKKI
AGIKKLLSAADADKAGKGSKTIDITKNRGGASEAKFIVRFLEGKLRLGLAERTVLVALAH
AMVAHEAEMDGGKPPSTDQLAKGEDILKTVYRYAPLLNIFGGISELILCDSELPSYEVII
PAMLKHGIFNLPDNCKLQPGVPLKPMLAKPTKSISEVLDRFEGKHFTCEYKYDGERAQIH
YISRDTIKEYPAASTTLQKDGEGLCAIFSRNSEDLSKKYPDILEKLEAWVKPGTQSFVVD
CETVAWDTVNKKVLPFQQLMTRKRKDVKSEDIKVKVCVFAFDLLFLNGEPTVKKTLRERR
ALLHEAFVPVEGEFAFAQHGNTSDLEEIQTMLDESVKASCEGLMVKMLDTEDSGYEPSKR
SRNWLKVKKDYLAGIGDSLDLVVLGAYFGRGKRTSVYGAFLLAAYNPKTQNYETICNIGT
GFSEALLEELHETLSPLVIDKPKPFYSHSTVPKDQPDVWFEPKFVWEVKAADLTLSPRYS
AASDEVMGNTGGSAAKGISLRFPRYIKARDDKKPDQATTTKAVAEMYRKQESVAMDKTKG
AVDDDFEY
NT seq 2727 nt   +upstreamnt  +downstreamnt
atggctcaaaaatcgggtggctcgaaacagtcaaccctagggaaatttttcggctccaat
agcaacccagcgccaaagaaacaatctacccttgcgttttcatcaaagtcaagcagtagt
aagaatgatgagaccaaggagaaagacgatgaggtcgcggaaggggcccctcaaacaccc
cagaagcaagttggccgtgcggagagcaagcgtactccaccaccaattgatgacggggat
gtagatggggaaatattgtctggtggtgagaaaagcgagtctgtttctcctgtgaccagg
aggcaaaaacgaaaggaggctgtcgcaatcaaaggtgatgaggagtcagatgagcaaccc
gtcacgaagcgccggaggagatcaccaaaatccaataccaaagccaagagccctgtcaac
ggtggtcgtagtaaggcggctgctaccggtgaacaatcgccaactaagatcaaatcggat
gctgaaccagagcaatcctccgccgaggagaattcagcttcggagattgaggaagatgat
atagacgataagccggccaaggttcagcagaagaagaaggccgcagctaaacaacggaaa
caagtccagagcactctcacatccaaacccaaagacctgtacccggattggaaggccgga
gaccccgttccctacgccgcgctttgcaccaccttctcacacatcgaaatgaccacaaaa
cgtcttattatattgtcacactgcgcgcttttcttgcgccaagtactccgtcttaccccg
gatgacttactttctaccgtccagttgatgataaataagttagcagcagattatgctgga
attgaactcggaattggtgaatctctaatcatgaaagctattggtgaatcgaccggacgc
agccttgcagtcatcaaagcagatcaaaatgaaatcggcgatcttggtcttgttgccgca
aagagtcgatcaaatcagcctaccatgttcaagcctaaagcgctgactgtacggggtgta
cacgaagggttgttggccattgctaagacgcatggtaccgggtctcaggagaaaaagatt
gcaggcattaaaaaactgctctctgctgccgatgctgacaaggcagggaaggggtcaaaa
accattgatattaccaaaaataggggtggtgctagtgaagccaaattcattgtacgattt
ttggaaggtaaacttcggcttggactggctgagaggactgtgcttgtcgctttagcccat
gcaatggtagcacacgaggctgagatggacggagggaaacctccaagtacagatcagctt
gccaagggcgaagacattcttaaaactgtctataggtatgctccacttctgaacattttt
ggtggtatatctgaattaatattgtgtgatagtgaacttccatcatatgaagtgatcatt
ccggccatgcttaaacacggaatcttcaatttgccagacaactgcaaattgcagcctggt
gttccattgaaacctatgcttgctaaacctaccaaatccattagtgaagttcttgaccga
ttcgaagggaagcatttcacatgcgaatacaagtatgatggcgagagagcacagatccat
tacatctctcgggacacaatcaaggaatacccagcggcttctacaacacttcaaaaagac
ggcgagggcctttgcgctatcttttctcgcaactctgaagacttatccaagaaataccct
gatatactcgaaaaactggaggcctgggtgaagcctggcacccagagttttgttgtggac
tgtgaaacagttgcttgggacactgttaacaaaaaggtccttccctttcaacaactcatg
actaggaagcgaaaggacgtgaaatcggaagacatcaaggttaaagtctgtgtttttgca
tttgacttgctcttcctgaatggagagcctaccgttaaaaagacgctgagggaacgacgt
gcccttttacatgaagcgtttgtgccagttgagggagagtttgcctttgctcagcacgga
aacactagcgatttggaagaaatacagaccatgcttgatgagagcgtcaaagcctcctgt
gaaggcctcatggtgaagatgttagatacagaggacagtggctatgagccaagcaagaga
agtagaaactggctgaaggtcaagaaagactaccttgctggcattggtgattccctcgat
cttgtcgtcttgggcgcatatttcggtcgtggcaaacgtacatccgtgtatggtgctttc
ctactagctgcatataatcccaagactcagaactacgaaacaatctgcaatattggcaca
ggtttctcagaagctttgttggaggaactccatgaaaccctcagcccgcttgttatcgat
aaaccaaagccgttttactctcactcaacagtccccaaggaccagccagacgtctggttt
gagcccaagttcgtatgggaagtcaaggctgctgatctcactctcagccccaggtatagc
gctgccagtgatgaagtgatgggcaacactggtggctccgcagctaagggtatctcatta
cgattcccccgatacatcaaggcgagagacgacaagaagccagaccaagctacgactaca
aaagctgttgcggagatgtatcgaaaacaggagagcgtagcaatggacaagaccaagggg
gccgtggatgatgattttgaatattga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (4)   
   KEGG PATHWAY (4)   
Chemical substance (11)   
   KEGG COMPOUND (11)   
Chemical reaction (7)   
   KEGG ENZYME (3)   
   KEGG REACTION (4)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (3)   
   Pfam (3)   
All databases (37)   

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