KEGG   Trichophyton verrucosum: TRV_06755
Entry
TRV_06755         CDS       T01615                                 
Name
(RefSeq) ATP dependent DNA ligase domain protein
  KO
K10777  DNA ligase 4 [EC:6.5.1.1]
Organism
tve  Trichophyton verrucosum
Pathway
tve03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:tve00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    TRV_06755
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:tve03400]
    TRV_06755
Enzymes [BR:tve01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     TRV_06755
DNA repair and recombination proteins [BR:tve03400]
 Eukaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    DNA Ligase 4 complex
     TRV_06755
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N
Other DBs
NCBI-GeneID: 9577203
NCBI-ProteinID: XP_003019206
UniProt: D4DHU8
AA seq 1076 aa
MGFNFSYICDLLSSLDANRTIKATTTGKSRDPDVATVTNWFRVHEKKIHGGDTDYVAFLS
CLFPELRPDRVHGFKEPALVKIIGRCLLLGATRWRELEAWKTPGRGDLAECVERVMADAE
NELLKDSPVTVEEIDSALTKIASRCRFSAPDVRHQRTAIQVDEALKPIFRRLTSRDAKWF
TRLLLREYTPVNIPQRLSLRKFHFMLPALLSVQSSLKGALEAMDRGPVKKFPPCPDPEYG
RTLMELAIPHLAPQVGVKVGRPEYYKARNLRHCCRMADKRLMSIERKYDGEYCQVHIDLE
MGPKCIRIFSKSGKDSTVDRKNIHTAIKDSLRIRKPGCRFSKRCILEGELLVWSDITNDI
LPFHHLRRHIMRAGTYIGTESDSPPDPREHLYIIFFDLLLLDDNVALSKPYGERRALLKE
VVNPIHGLAGVATQFDIDFSVPSAYEHLKEEFALVSAQKWEGLVLKGVNEPYFRTFSQDT
REFSCCWMKFKKESIPGLGDIADFILLGGRYDSRDAAALSHIKGLSWTSFFVGCLDDDVD
LLSPKPAFRVIDILNKQNINTNLFQTLNQLGKFQACDSDSDDVPFSFRVDQVRIPEIQTV
FRIPFVVEMTGFGFDKPQGVRYYSLRFPRIVKIHSDRDYEAAVSFRDLQELARIANAVPV
EELSQEVAELAEKLDPVDKKPEYIVDHSENSATTVTASSAANSSQPLFAENNSIDQQRPN
QVAVVKATSHKSEQELSLRTQRGSSTINCVNTQENSNETVSNLVCILPDTTETFGEPLHS
KKSPGRELADITNPSEDNSTLFPRNDSCHNKSQPVKRVPFYENMQPNASFPSDRFPMDPA
PQRALSFQSYHSHNSNDKCSLETTLTRSSSDISGRNNRPNAMKGSPILKLPVFLGSSLSD
TTISLLRRYIPSCRSSIAPSSIPRWLTSLVSSENSSVVPSLYGIILVDSNTRHSSKVAAE
LRQVGRALTSLQQQNKLPNTGKIIFMHWKVVGQEFNAAKAGESLFDRWQRFGKDVIDVCI
KWGHEESPECENRQDQRLPNSSLGSQSEKLPKNICCRRDWTEILPLLQPNTLRKST
NT seq 3231 nt   +upstreamnt  +downstreamnt
atggggtttaacttttcttatatatgcgacttgctttcgagcttggatgcaaaccgaact
ataaaggccacgactaccggcaaaagcagagatcctgatgtggcaactgtgaccaattgg
ttccgtgttcacgagaagaaaattcacggaggagatactgactacgtggctttcctctcg
tgccttttccccgaattacggcctgaccgcgttcatggcttcaaagagccggccttagtt
aaaattataggacgatgtttattgcttggagctactcgatggcgggagctggaggcgtgg
aagactccgggccgcggcgatcttgccgaatgcgtcgagcgagttatggctgatgcagag
aacgaattattaaaggactcccctgtgactgtcgaggaaatagattctgcgttgactaaa
atcgcgtccagatgccgcttctccgctccggatgtgcgccaccagcgtactgctattcag
gtagatgaagccttaaaaccgatatttcgccgattaactagccgtgatgcaaaatggttt
actaggctgcttctcagggaatacactcctgttaatattccacagcgattgtccctgcga
aagtttcatttcatgcttccggcccttctttcggtacagagcagcttaaagggggccttg
gaggcaatggatcgcggaccagtcaagaagttcccgccatgccctgatccagaatatggg
cggactcttatggaattagctattcctcatcttgctccacaggttggtgtcaaggttggg
aggccggaatattataaggctagaaacctcagacactgctgcagaatggctgataagcga
ttaatgagcatcgagaggaaatatgatggagagtactgtcaggtacatattgacttggaa
atgggtcccaaatgtatccgaatattctcgaagagtggcaaagactcaacggtggataga
aaaaatatccatactgctattaaggattcgctgaggatccgaaagcctggctgtcgattt
tccaaacgatgcatactggaaggtgaactattggtttggagtgatattaccaatgatatc
ctcccctttcatcatttacgaaggcatatcatgagagcaggaacgtatattggcactgaa
agcgattctccgccagaccctcgggaacatttatatatcatatttttcgacttgttgctt
ctagatgataatgtcgcattatccaagccctatggggaacgaagggctcttcttaaagaa
gttgtaaatccgatccatgggctggctggggttgcaacgcaatttgatatagatttttct
gtgcctagtgcatatgaacacttaaaagaagagttcgctcttgtctcggcccagaaatgg
gaagggcttgttttgaagggagtgaatgagccatatttccgaacattctctcaggatact
cgtgaattttcctgctgctggatgaaattcaaaaaggagtctatcccaggcttaggagac
atagctgatttcattctactgggggggagatatgattctcgggacgctgccgcccttagt
catattaaaggattatcctggacttctttcttcgttggttgtctggatgatgacgttgac
ttgctctcaccaaaaccagccttccgcgttattgatattctgaataaacagaatatcaac
actaacttgttccaaactctcaaccaactggggaagttccaagcctgtgattctgactct
gatgatgttcccttttcctttcgagtcgatcaagtcagaataccggagattcagaccgta
tttaggataccattcgttgtggaaatgaccggcttcggattcgataaacctcaaggtgtt
cgatattactcccttcggttccctcgaattgtgaaaatccactcagatagggattatgag
gcagcagtgtcgttcagagacttacaagaactggcccgaattgctaatgccgttccagtt
gaggaactatcacaagaagttgctgaattagctgaaaagctcgatccagttgacaaaaaa
cctgaatatattgtagatcattcggaaaactcagctaccacagtgacagcatcaagtgct
gccaactcatcccaacctttgtttgctgaaaacaactcgatcgatcaacagagacctaac
caagtggctgtggtgaaagcaacatctcataagtctgagcaggagctcagccttcgaact
caacgtggatcctcgactattaattgtgtcaatacccaggaaaattccaacgagacggtg
tcaaacctagtgtgcatcctcccagataccacagaaacattcggggaaccgctacatagc
aagaaatcgcctggtcgagagttagccgatataactaatccaagtgaagataattccaca
cttttcccgagaaatgactcctgtcataataagtcgcaacctgtcaaaagagtccctttt
tatgagaacatgcagcctaatgctagctttccatcggatcgatttcccatggatccagcg
cctcagcgagcgctttccttccagtcataccattctcataatagcaatgacaagtgctca
ttggagactacgttgaccagatcttcatccgatatatcaggccgcaacaacaggcctaat
gcaatgaaaggctctcccattttgaagcttcccgtttttctcggatcctcgctatcagac
acaacaataagcttacttcgacgctacataccatcatgcagatcatcaatagcaccttct
tccattcctcgatggttgacttcactggtctcgtcagagaacagcagtgtcgtgccatct
ctctatggtatcatacttgtggattctaatacccgtcactcgtctaaggtcgcggccgag
ctaagacaggtcggcagagctctcacctcgttacaacaacagaacaagttaccaaatact
ggtaaaattatattcatgcattggaaggttgttgggcaagagttcaatgcagcgaaggct
ggtgaaagtttgtttgatcgatggcagagattcggcaaagatgttatagatgtatgtatt
aaatggggtcatgaggaaagccctgaatgcgagaatcgacaggatcaaaggttgcctaat
agctcccttggttcacaaagtgagaaattacccaaaaacatatgctgccgccgtgattgg
acggagattctgccgttgctacagccaaatactctacggaagagtacttag

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Ontology (3)   
   KEGG BRITE (3)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical substance (5)   
   KEGG COMPOUND (5)   
Chemical reaction (2)   
   KEGG ENZYME (1)   
   KEGG REACTION (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (4)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (2)   
   Pfam (2)   
All databases (21)   

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