KEGG   Thiocystis violascens: Thivi_0245
Entry
Thivi_0245        CDS       T02138                                 
Name
(GenBank) DNA polymerase III epsilon subunit-like 3'-5' exonuclease
  KO
K02342  DNA polymerase III subunit epsilon [EC:2.7.7.7]
Organism
tvi  Thiocystis violascens
Pathway
tvi03030  DNA replication
tvi03430  Mismatch repair
tvi03440  Homologous recombination
Brite
KEGG Orthology (KO) [BR:tvi00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    Thivi_0245
   03430 Mismatch repair
    Thivi_0245
   03440 Homologous recombination
    Thivi_0245
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:tvi03032]
    Thivi_0245
   03400 DNA repair and recombination proteins [BR:tvi03400]
    Thivi_0245
Enzymes [BR:tvi01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.7  DNA-directed DNA polymerase
     Thivi_0245
DNA replication proteins [BR:tvi03032]
 Prokaryotic type
  DNA Replication Elongation Factors
   Elongation factors (bacterial)
    DNA polymerase III holoenzyme
     Thivi_0245
DNA repair and recombination proteins [BR:tvi03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    DNA polymerase III holoenzyme
     Thivi_0245
SSDB
Motif
Pfam: RNase_T RNase_H_2
Other DBs
NCBI-ProteinID: AFL72314
UniProt: I3Y5P6
Position
complement(256560..257237)
AA seq 225 aa
MLSLLDWQRRWRLRRAPPGPLRDYLQQPFAHPRTDYRELEYLAIDLETTGLDSRRDLILS
VGYVVVRGVRIDLSTARHQVVRIDRSIPEASAVIHQITDDQSADGCELVDAIAELLPALA
GRIMIAHHASIEQSFISNACKHAWGQGLPMRIVDTQALALRTFERRQIPFKVSDLRLHAL
GNRYNLPRYGAHNALSDALAAAELFLAQAAYRDDGRGLPLADFLC
NT seq 678 nt   +upstreamnt  +downstreamnt
atgctttcattgctcgactggcagcgccgctggcgcctgcgccgcgcgccgccaggcccc
ttgcgcgactatctgcaacagcccttcgcgcatccgcgaacggattatcgcgaactggaa
tatctggccatcgatctggagacgaccggactcgacagtcgccgcgacctgatcctgagc
gtcggctatgtcgtcgtgcgcggggtccggatcgacctgtccaccgcccggcaccaggtg
gtgcgcatcgaccgttccattccggaggcgagcgcggtcatccatcagatcaccgacgac
cagtcggccgatggctgcgaactcgtcgacgcgatcgcggaactgctgccggcgctggcg
ggcaggatcatgatcgcccatcatgccagcatcgagcagagctttatctccaatgcctgc
aaacacgcttgggggcaagggctgccgatgcggatcgtcgacacccaggcgctggccctg
cgcaccttcgagcggcggcagatccccttcaaggtctccgatctccgtctgcatgcgctc
ggcaatcgctacaatcttccccgctacggcgcccacaacgccttgagcgacgcgctggcc
gccgccgagctgtttctggcccaggcagcctatcgggacgatggtcggggcctgccgctc
gccgatttcctgtgttga

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Ontology (4)   
   KEGG BRITE (4)   
Pathway (3)   
   KEGG PATHWAY (3)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (11)   
   KEGG ORTHOLOGY (1)   
   RefGene (8)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (2)   
   Pfam (2)   
All databases (23)   

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