KEGG   Thioalkalivibrio versutus: TVD_02330
Entry
TVD_02330         CDS       T03959                                 
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
  KO
K03046  DNA-directed RNA polymerase subunit beta' [EC:2.7.7.6]
Organism
tvr  Thioalkalivibrio versutus
Pathway
tvr03020  RNA polymerase
Brite
KEGG Orthology (KO) [BR:tvr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    TVD_02330
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:tvr03021]
    TVD_02330
   03400 DNA repair and recombination proteins [BR:tvr03400]
    TVD_02330
Enzymes [BR:tvr01000]
 2. Transferases
  2.7  Transferring phosphorus-containing groups
   2.7.7  Nucleotidyltransferases
    2.7.7.6  DNA-directed RNA polymerase
     TVD_02330
Transcription machinery [BR:tvr03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Core subunits
     TVD_02330
DNA repair and recombination proteins [BR:tvr03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase complex (RNAP)
      TVD_02330
SSDB
Motif
Pfam: RNA_pol_Rpb1_1 RNA_pol_Rpb1_5 RNA_pol_Rpb1_2 RNA_pol_Rpb1_3 RNA_pol_Rpb1_4 Peptidase_M23 Phage_DsbA
Other DBs
NCBI-ProteinID: AKJ94279
UniProt: A0A0G3G1M3
Position
492768..496988
AA seq 1406 aa
MKDLLNLFKQQTQPEEFDAIRIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRLKHRGVVCEKCGVEVTQTKVRRERMGHIDLASPVAHIWYLKSL
PSRIGLLLDMTLKDIEKVLYFESFIVTDPGFTTLEKRQLLTDEEYLEAMEEHGDDFTALM
GAEAVLSLLKEMDLPAEATKLRQDLSETGSETKIKRFGKRLKLVEAFLDSGNKPEWMIMK
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPT
LRLHQCGLPKRMALELFKPFIFGKLQRRGLATTIKAAKKAVEKEGPEVWDILEEVIREHP
VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA
RTLMLSSNNVLSPANGEPIIVPSQDIVLGLYYLSREKVNAKGEGMTFADVDEVHRAYEHK
LVDLHARVTVRIGDTMAEVGEGESLPYLRLETTVGRAILSRIMPKGLPFELIDRELNKKA
ISGLINQCYRRLGLKDTVVFADQLMYAGFYYSTRAGVSFCADDMVIPDEKQPILQGAEEQ
VKEIENQYASGLVTKGERYNKVVDIWSHCNDQVAKAMMERLGKEKVVNKDGETVEQNSFN
SIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVSQDVVVTQPDCGTQQGLQMKPIIEGGDVVEPLRDRVL
GRTTAVDVLRPGTDEVLIPAGTLLDEAMVDSLDAASVDEVLVRSAITCETRQGICAKCYG
RDLARGHEVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAVTVSAIQVKSSGSVRL
HNLKTVTNKAGNLVAVSRSGELGVIDDQGRERERYKIPYGALITVHDSDAVEAGQEVASW
DPHTHPIVTEVAGNLRLADFVENVTVTKETDEFTGLSSNVVLDPKSRSTAGKDLRPTVKL
LDDDGNEVYIPGTDMPAQYMLPANAIFNLEDNARVEVGDVIARLPQESSKTRDITGGLPR
VADLFEARRPKEPAVLAEISGTVSFGKETKGKQRLVITPDKGDPVEMMIPKLRTVNVFEG
ERVERGEVVVDGELDPHDIIRLRGVTTLAEYQVQEIQDVYRLQGVKINDKHIEVIVRQMM
RKVNIEDAGDTKFLAGDQVDRIRVLEENEQLGADKQPATYERVLLGITKASLVTESFISA
ASFQETTRVLTEASTRGARDDLRGLKENVIVGRLIPAGTGLAYHKERRRKRALEMPEFET
VAEAPAVIADSEPATTDPGTTEDGSE
NT seq 4221 nt   +upstreamnt  +downstreamnt
atgaaagacctcctgaatctgttcaagcaacagacccagccggaagagttcgatgcgatc
cgcatcggtcttgcgtccccggaccagatccgttcctggtcctttggcgaggtgaagaag
ccggaaaccatcaattaccggacgttcaagccggaacgtgatggcctgttctgcgcgaag
atcttcgggccggtgaaggactacgagtgcctgtgcggcaagtacaagcgcctgaagcat
cgtggcgtggtgtgcgagaagtgcggcgtcgaagtgacccagaccaaggtacggcgcgag
cgcatgggccatatcgacctggcctcgccggttgcccacatctggtacctgaagagcttg
ccgtcccgtattggcctgctgctcgacatgaccctgaaggacatcgagaaggtcctgtac
ttcgagtccttcatcgtcaccgatccgggcttcaccacgctggagaagcgccagctcctg
accgacgaggaatacctcgaggcgatggaagagcacggtgacgacttcaccgcgctgatg
ggcgcggaggccgtgctgagcctgttgaaggaaatggatctgccggccgaggcgacgaag
ctgcgccaggacctgagcgagaccggttccgagaccaagattaagcgcttcggcaagcgg
ctcaagctggtcgaggccttcctcgattccggcaacaagccggagtggatgatcatgaag
gtgctgccggtactgccgccggacctgcgtccgctggtgccgctggatggcggccggttt
gcgacgtccgacctcaatgatctgtaccgccgggtgatcaaccgcaacaaccgtctgcgt
cgcttgctggagctgaatgccccggacatcatcgtgcgcaacgaaaagcgcatgctgcag
gagtccgtggacgcgctgctggacaacggccgtcgcggccgtgccatcaccggtaccaac
aagcgcccgctgaagtccctggccgacatgatcaagggcaagcagggccgcttccgccag
aacctgctgggcaagcgtgtcgactactccggtcgctcggtgatcgtggtgggcccgacc
ctgcgcctgcaccagtgcggtctgcccaagcgcatggcgctggagctgttcaagccgttc
atcttcggcaagctgcagcgccgtggtctcgcgaccaccatcaaggccgccaagaaggcg
gtggaaaaggaaggtcccgaggtctgggatatcctggaagaggtgatccgcgagcacccg
gtcatgctgaaccgcgcgccgaccctgcaccgcctgggtatccaggcgttcgagccggta
ctgatcgaaggcaaggcgatccagctgcacccgctggtctgcgccgcgttcaacgcggac
ttcgacggtgaccagatggccgtgcacgtgccgctgtcgctggaggcccagctggaggca
cgcacgctgatgctgtcctccaacaacgtgctgtcgccggccaacggcgagccgatcatc
gtgccgtcgcaggatattgtcctggggctctactacctgtcgcgcgagaaggtgaacgcg
aagggcgaaggcatgacgttcgccgacgtggatgaagtccaccgcgcctacgagcacaag
ctggtggatctccacgcgcgcgttaccgtccggattggcgacaccatggccgaggtcggc
gagggcgagagcctgccgtacctgcgcctggagaccacggtgggtcgcgcgatcctgtcg
cgcatcatgcccaagggtctgccgttcgagctgatcgaccgcgagttgaacaagaaggcg
atctccggcctgatcaaccagtgctatcgccgcctgggtctgaaggatacggtggtgttc
gcggaccagctgatgtacgcgggcttctactactccacccgtgccggcgtctccttctgc
gccgacgacatggtgatcccggacgagaagcagccgatcctgcagggcgccgaagagcag
gttaaggagatcgagaaccagtacgcctcgggtctcgtgaccaagggcgagcgttacaac
aaggtcgtggatatctggtctcactgtaatgaccaggtcgccaaggccatgatggagcgg
ctcggcaaggagaaggtcgtcaacaaggacggcgagacggtcgagcagaactcgttcaac
tcgatcttcatgatggccgactccggtgcgcgtggctccgccgcgcagattcgtcagctg
gccggcatgcgtggcctgatggccaagccggacggctcgatcatcgagacgccgatcacc
gcgaacttccgcgaaggtctcaacgtcttgcagtacttcatctccacccacggcgcccgt
aaggggctggccgatacggcgttgaagaccgcgaactcgggttacctgacccgtcgcctg
gtggatgtctcccaggatgtagtggtgacccagccggattgcgggacccagcagggcctg
cagatgaagccgatcatcgaaggtggcgacgtggtcgagccgttgcgcgaccgcgtgctc
ggtcggaccactgcggtcgatgtgctgcgcccgggtaccgatgaggtattgatcccggcc
ggcacgctgctggacgaggccatggtggactccctggatgccgcttcggtcgacgaagtg
ctggtgcgttccgcgattacctgcgagacccgccagggcatttgtgccaagtgctatggg
cgtgacctggcgcgtggccacgaagtcaacgccggcgaggccgtgggcgtcatcgccgca
cagtcgatcggcgagccgggtacccagctgacgatgcgtactttccatattggtggggcc
gcgagccgggccgtgacggtcagtgcgatccaggtgaagagctccggttctgtccgtctg
cataacctgaagacggtcaccaacaaggccggcaacctggtcgcggtctcgcgctccggc
gagctgggtgtgatcgacgatcagggtcgcgaacgggagcgctacaagattccctatggc
gcgctgatcacggtccacgacagcgatgccgtggaagctgggcaggaagtcgccagctgg
gatccgcatacccatccgatcgtcaccgaggtggccggtaacctgcgcctcgcggacttc
gtggagaacgtgacggtcaccaaggagaccgatgagttcaccggcctgtcgtccaacgtg
gtcctggatccgaagagccgctctacggcgggcaaggatctgcgcccgacggtcaagctg
ctggacgacgacggcaacgaggtgtacatcccggggaccgacatgcccgcgcagtacatg
ctgccggccaatgcgatcttcaacctggaggacaacgcccgggtcgaggtgggtgacgtc
attgcccgcctgccgcaggagtcctccaagacgcgtgacatcaccggtggtctgccgcgt
gtggccgacttgttcgaggcgcggcgtcccaaggagccggcggtgctggccgagatctcg
ggcaccgtgtccttcggcaaggagaccaagggcaagcagcgtctcgtgatcaccccggac
aagggtgacccggtcgagatgatgattcccaagctgcggaccgtgaacgtgttcgaaggc
gagcgtgtcgagcgtggcgaggtcgtggtggatggtgagctggatccgcatgacatcatc
cgtctgcgcggtgtcaccaccctggccgagtaccaggtccaggagatacaggacgtttat
cgcctgcagggtgtgaagatcaacgacaagcacatcgaggtgatcgtccgccagatgatg
cgcaaggtgaacatcgaggacgccggcgacaccaagttcctcgccggggaccaggtggat
cgcatccgggtgctggaggagaacgagcagctgggtgccgacaagcagccggcaacctac
gagcgcgtgctcctgggtatcaccaaggcgtcgctggtgaccgagtcgttcatctctgcg
gcctccttccaggagaccacccgcgtgctcaccgaggcctcgacccgcggtgcgcgtgat
gatctgcgcggcctgaaagaaaacgtgattgtcggacgcctgatccccgcggggacgggc
ctcgcctatcacaaggagcgtcgccgcaagcgcgcactggaaatgcccgagttcgagacg
gtcgcggaggcgccggcggtgatcgccgactccgaaccggccacgaccgacccgggtacc
acggaagacgggtccgagtga

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (1)   
   KEGG PATHWAY (1)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (3)   
   KEGG ORTHOLOGY (1)   
   NCBI-PROTEINID (1)   
   OC (1)   
Protein sequence (1)   
   UniProt (1)   
Protein domain (7)   
   Pfam (7)   
All databases (18)   

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