KEGG   Ustilago maydis: UMAG_04151
Entry
UMAG_04151        CDS       T01021                                 
Name
(RefSeq) putative TFIIH/NER complex ATP-dependent 5'-3' DNA helicase subunit RAD3
  KO
K10844  DNA excision repair protein ERCC-2 [EC:5.6.2.3]
Organism
uma  Ustilago maydis
Pathway
uma03022  Basal transcription factors
uma03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:uma00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    UMAG_04151
  09124 Replication and repair
   03420 Nucleotide excision repair
    UMAG_04151
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:uma03021]
    UMAG_04151
   03400 DNA repair and recombination proteins [BR:uma03400]
    UMAG_04151
Enzymes [BR:uma01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.3  DNA 5'-3' helicase
     UMAG_04151
Transcription machinery [BR:uma03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIIH
     UMAG_04151
DNA repair and recombination proteins [BR:uma03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TFIIH complex
     UMAG_04151
SSDB
Motif
Pfam: HBB DEAD_2 Helicase_C_2 ResIII DEAD nSTAND3 DUF4932
Other DBs
NCBI-GeneID: 23564413
NCBI-ProteinID: XP_011390642
UniProt: A0A0D1C1C2
Position
12:complement(172537..175089)
AA seq 850 aa
MKFYIDELPVLFPYPKIYPEQYAYMTDLKRTLDANGHCVLEMPSGTGKTVSLLSLIVSYQ
QFHPAKRKLIYCSRTVPEIEKALAELKRLMEYRARYNVQQDQASGVLKKESQSSDRPGEH
NIEMNGKGNTGSQMEDILALGLSSRKNLCIHPDVSRERKGKVVDARCRDMTSSWACEKGR
QDPGSVELCNFHEELGKMEPGQLIPQGVWTLEEVKEYAREKAICPYFAIRRMMPFVDIII
YSFHYLLDPKVAEQVSKEMSKDAIVVFDEAHNIDNVCIESLSIDLTRPMLDSAYRSINQL
SERVDEIKKTDASKLQDEYARLVEGLQQQGEQREAESFMANPVLPDDLLQEAVPGNIRRA
EHFVAFLKRFVEYLKTRMRVLHVVAETPASFLQHLKDITYIERKPLRFCAERLRMLVGTL
ELTRLDEFSALQKVAAFATLVATYDKGFLLILEPFETENATVPNPIFHFTCLDASLAIAP
VFERFSSVIITSGTISPLDMYPKMLKFDAIVQESYAMTLTRQCFLPLVITRGSDQVAISS
RFEVRNDPAVVRNYGSILIEYAKCVPDGIVAFFPSYLYMESIVAAWHDMGILDEVWKYKL
IFIETPDAPETSIALENYRRACDNGRGAILLSVARGKVSEGIDFDHNYGRAVIMFGVPYQ
YTESRILKARLEFLRDNFRIRENDFLTFDAMRHAAQCVGRVLRGKTDYGLMVFADKRFAR
ADKRNKLPKWIAQYIKETHSNLSTDMAIVESKLFIRSMAQPYPEGKNGVSLWELADIESR
QAKERETFAKLMRGQLTVDASGQVVGKDDTDSDTHVVERDRQDEDDDFDREFGEGDELVQ
MDVDSVIQQA
NT seq 2553 nt   +upstreamnt  +downstreamnt
atgaagttctacatcgatgagctccccgtgctcttcccttaccccaaaatctatccggag
cagtatgcgtacatgactgatctcaaacgcacgctcgatgccaacggtcactgtgttcta
gagatgccttcaggcaccggcaaaaccgtctcgcttctcagtctcatcgtatcctaccag
cagttccatcctgccaagcgcaagctcatctactgctcgcgtacggttcctgagatcgaa
aaggctctagcagagctgaagcgtttgatggagtacagggcgaggtacaatgtccaacaa
gaccaggcttccggggtgctcaagaaggagagccaaagcagtgaccgtcctggagagcac
aacatcgagatgaacggcaagggaaatactggatcgcagatggaggacatcctcgcctta
ggcctcagttcgcgtaaaaatctctgcatccatccagatgtcagtcgtgagcgcaagggc
aaggtcgtcgatgccaggtgtagggacatgaccagcagttgggcctgcgaaaagggccgt
caagatcctggtagcgtcgaactctgcaattttcacgaagagctcggcaagatggaaccg
ggtcaacttatcccacaaggcgtctggacactcgaagaagtcaaagagtacgctcgcgaa
aaggcgatatgtccttactttgccatccgacgcatgatgcccttcgtcgacattattatc
tacagcttccactacctgctcgatcccaaggtcgccgagcaggtcagtaaagagatgagc
aaggatgccatcgtcgtgttcgacgaggcgcacaacatagacaatgtatgcatcgagtct
ctttccatcgacctcacacggcccatgctcgacagcgcatatcgaagcatcaatcaactc
tcggaacgtgtcgacgaaattaaaaagacggacgcatccaagctacaggacgaatatgcg
cgtctggtcgagggcttgcaacaacaaggcgagcagagggaagccgagtctttcatggcc
aaccccgttctaccagacgatctcttacaagaagctgtgccgggcaacattcgtcgagcc
gaacactttgttgccttcttgaagcgctttgtcgagtacctaaaaacacgcatgcgcgtc
ctgcacgtcgtcgccgagactccagcgagcttcctgcagcacttgaaggacattacctac
attgagcgcaaaccgctccgcttttgtgccgaacgactccgcatgctcgtaggcacgctc
gaactcactcgtctcgatgaattttcggcgttgcaaaaagtggcagcatttgcgacgctc
gtagccacctacgacaaaggcttcctgctcatcctcgaaccctttgaaaccgaaaacgct
accgtgcccaatccaatcttccatttcacatgtttggacgccagtctcgccatcgcgcca
gtctttgaacgcttctcgagcgtcattatcactagtggaaccattagtccgctcgacatg
taccccaagatgctcaaattcgacgccattgtgcaggagtcgtacgccatgacgctcact
cgccagtgttttctgccgctcgtcatcacgagaggaagcgaccaggtggccatcagttcg
cgcttcgaggtgcgtaacgatccagctgtggtgcgcaactatggcagcatcctcatcgag
tatgcgaaatgcgttccggacggcattgtcgccttcttcccctcctatctgtacatggag
agcatcgtggccgcgtggcacgacatgggcattctcgatgaagtgtggaagtacaagctc
atctttatcgaaacacccgacgcccccgagacgagtattgcgctggaaaactaccgtcgg
gcatgcgacaacggtcgaggtgcgattctgctctcggtcgctagaggtaaagtgtctgag
ggtatcgatttcgatcacaactacggacgcgcggtgatcatgttcggtgtgccgtaccag
tacaccgagtcgcgcatcctaaaggcgcgattggagtttttgcgcgacaactttcgaatt
cgcgaaaacgactttttgacttttgacgccatgcgacacgcggcgcagtgcgtaggacgt
gtgttgcgaggtaagaccgactacggtcttatggtgtttgccgataaacgattcgcacgt
gccgacaagcgcaacaagttgcccaagtggatcgcacagtatatcaaggaaacccattcg
aatctatccacggatatggccatcgtagagtcaaagcttttcatccggtccatggcgcaa
ccctaccccgaaggcaagaacggcgtcagcttgtgggagttggccgatatcgagtctagg
caggccaaagagagggagacgtttgccaagctcatgcgcggtcagctcacggtggacgcc
agtggacaagtggtgggcaaggacgatactgattcggatacgcatgtggtcgagcgtgat
aggcaggacgaggatgacgatttcgatagggagtttggcgagggcgacgagttggttcag
atggacgtcgattcggtgatccagcaggcgtaa

  All links  
Ontology (4)   
   KEGG BRITE (4)   
Pathway (2)   
   KEGG PATHWAY (2)   
Chemical reaction (1)   
   KEGG ENZYME (1)   
Genome (1)   
   KEGG GENOME (1)   
Gene (17)   
   KEGG ORTHOLOGY (1)   
   RefGene (13)   
   NCBI-PROTEINID (1)   
   NCBI-Gene (1)   
   OC (1)   
Protein sequence (2)   
   UniProt (1)   
   RefSeq(pep) (1)   
DNA sequence (1)   
   RefSeq(nuc) (1)   
Protein domain (7)   
   Pfam (7)   
All databases (35)   

Download RDF
DBGET integrated database retrieval system