ID   A0A061DHQ1_THECC        Unreviewed;       897 AA.
AC   A0A061DHQ1;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   27-MAR-2024, entry version 48.
DE   SubName: Full=Tetratricopeptide repeat-like superfamily protein, putative isoform 1 {ECO:0000313|EMBL:EOX91702.1};
GN   ORFNames=TCM_000805 {ECO:0000313|EMBL:EOX91702.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOX91702.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOX91702.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
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DR   EMBL; CM001879; EOX91702.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A061DHQ1; -.
DR   STRING; 3641.A0A061DHQ1; -.
DR   EnsemblPlants; EOX91702; EOX91702; TCM_000805.
DR   Gramene; EOX91702; EOX91702; TCM_000805.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_009409_1_0_1; -.
DR   InParanoid; A0A061DHQ1; -.
DR   OMA; FWEEGRV; -.
DR   Proteomes; UP000026915; Chromosome 1.
DR   GO; GO:0009507; C:chloroplast; IBA:GO_Central.
DR   GO; GO:0009658; P:chloroplast organization; IBA:GO_Central.
DR   GO; GO:0042793; P:plastid transcription; IEA:EnsemblPlants.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR   InterPro; IPR044645; DG1/EMB2279-like.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 2.
DR   PANTHER; PTHR46935; OS01G0674700 PROTEIN; 1.
DR   PANTHER; PTHR46935:SF2; PPR_LONG DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF01535; PPR; 2.
DR   Pfam; PF13812; PPR_3; 2.
DR   PROSITE; PS51375; PPR; 4.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          341..375
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          376..410
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          411..445
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          516..550
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REGION          1..25
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   897 AA;  102599 MW;  196F83C74A720136 CRC64;
     MDASIVPSPQ LPPPQFEPNT ENIKRKLLRK GVYPTPKIIR TLRKREIQKH TRKTKHSQPQ
     TPPLTAFQLQ SLAEESHFLT LKREYKRFSK ELNPKKEPRS PSLLGKPWER IERAKLAELV
     SKNGEFDGQS LKRENLVELR EMFEKDLRWV LDDDVDVEDD GGLLPREKPA RDRDPSKRWR
     NEKEAIRFLV DRLSEREITE RHWKFVRIMK QSGLQFTEWQ LLRIVEGLGK NGKWRQAMAV
     VQWLYGNKEH KEFKSRFVYT KLLSVLGKAR KPQEALRVFN LMLGDCHIYP DLAAYHSIAV
     TMGQAGLLKE LLNIIERMRQ RPYKRIKNMR RKNWDPVLEP DLVVYNAVLN ACVPVHQWKG
     VSWVFEQLRK SGLRPNGATY GLAMEVMLQS GKYDLVHEFF RKMKRSGEAP RALSYRVLVK
     AFWEEGKINE AVEAVRDMEQ RGVIGTASVY YELACCLCKN GRWRDAIIEV DKMKKLSQRK
     PLEITFTGLI MASLDGGHFN DCISIFQYMK DHCAPNIGTI NAMLKVYGQN DMFSKAKELF
     EEINKAKSGP YDSQNGKSTN LIPDGYTYSL MLGASASALQ WEYFEYVYKE MTLSGYHLDQ
     TKHAILLVEA SRARKWYLLE HAFDTFLEVG EIPHPLLFTE MIIQATAQSN YEKVVTLVNT
     MAHALYQVSE KQWTEAFEEN GDRISHGSLS KLLDALSNCE LSSEITASNL IRSLQYLCGS
     AKSEPNSNDG ETYGSERLNI QSISQDMRGE KIIAAMDPPL KATDVSFAVF SANCNGKNEE
     GGVDADLIHR LSNYDMDDSA SKTFTCMEDF ANDTASGDPT SMGKQVSLLN LDEYTKDVDE
     AEVDLPIDDD EAEMELLINE DGDSSTSKLP SANEILESWK ESSKNDGIFF PIHLGLK
//