ID A0A061FDV9_THECC Unreviewed; 783 AA.
AC A0A061FDV9;
DT 03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT 03-SEP-2014, sequence version 1.
DT 24-JAN-2024, entry version 46.
DE SubName: Full=LSD1-like 1 {ECO:0000313|EMBL:EOY15211.1};
GN ORFNames=TCM_034356 {ECO:0000313|EMBL:EOY15211.1};
OS Theobroma cacao (Cacao) (Cocoa).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY15211.1, ECO:0000313|Proteomes:UP000026915};
RN [1] {ECO:0000313|EMBL:EOY15211.1, ECO:0000313|Proteomes:UP000026915}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA Kuhn D.N.;
RT "The genome sequence of the most widely cultivated cacao type and its use
RT to identify candidate genes regulating pod color.";
RL Genome Biol. 14:R53.1-R53.24(2013).
CC -!- SIMILARITY: Belongs to the flavin monoamine oxidase family.
CC {ECO:0000256|ARBA:ARBA00005995}.
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DR EMBL; CM001886; EOY15211.1; -; Genomic_DNA.
DR RefSeq; XP_007017986.1; XM_007017924.2.
DR AlphaFoldDB; A0A061FDV9; -.
DR SMR; A0A061FDV9; -.
DR STRING; 3641.A0A061FDV9; -.
DR EnsemblPlants; EOY15211; EOY15211; TCM_034356.
DR EnsemblPlants; Tc08v2_t004830.1; Tc08v2_p004830.1; Tc08v2_g004830.
DR GeneID; 18591675; -.
DR Gramene; EOY15211; EOY15211; TCM_034356.
DR Gramene; Tc08v2_t004830.1; Tc08v2_p004830.1; Tc08v2_g004830.
DR KEGG; tcc:18591675; -.
DR eggNOG; KOG0029; Eukaryota.
DR HOGENOM; CLU_004498_5_0_1; -.
DR InParanoid; A0A061FDV9; -.
DR OMA; SSRGEMF; -.
DR OrthoDB; 5402444at2759; -.
DR Proteomes; UP000026915; Chromosome 8.
DR GO; GO:0005737; C:cytoplasm; IEA:EnsemblPlants.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0016491; F:oxidoreductase activity; IBA:GO_Central.
DR GO; GO:0006325; P:chromatin organization; IEA:UniProtKB-KW.
DR GO; GO:0045892; P:negative regulation of DNA-templated transcription; IEA:EnsemblPlants.
DR GO; GO:0048364; P:root development; IEA:EnsemblPlants.
DR Gene3D; 3.90.660.10; -; 1.
DR Gene3D; 3.50.50.60; FAD/NAD(P)-binding domain; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 1.
DR InterPro; IPR002937; Amino_oxidase.
DR InterPro; IPR036188; FAD/NAD-bd_sf.
DR InterPro; IPR009057; Homeobox-like_sf.
DR InterPro; IPR007526; SWIRM.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR PANTHER; PTHR10742; FLAVIN MONOAMINE OXIDASE; 1.
DR PANTHER; PTHR10742:SF381; LYSINE-SPECIFIC HISTONE DEMETHYLASE 1 HOMOLOG 1; 1.
DR Pfam; PF01593; Amino_oxidase; 1.
DR Pfam; PF04433; SWIRM; 1.
DR SUPFAM; SSF54373; FAD-linked reductases, C-terminal domain; 1.
DR SUPFAM; SSF51905; FAD/NAD(P)-binding domain; 1.
DR SUPFAM; SSF46689; Homeodomain-like; 1.
DR PROSITE; PS50934; SWIRM; 1.
PE 3: Inferred from homology;
KW Chromatin regulator {ECO:0000256|ARBA:ARBA00022853};
KW Reference proteome {ECO:0000313|Proteomes:UP000026915}.
FT DOMAIN 102..203
FT /note="SWIRM"
FT /evidence="ECO:0000259|PROSITE:PS50934"
FT REGION 1..75
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1..66
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 783 AA; 86058 MW; C14FD355089CC96B CRC64;
MEPPQDTSEN PNDVVSDDFS SPENTNPEDQ ENPGATLEPP ISDSQDESSD PVPDEQPQNT
NSNPAEPGPP VRRRRRRKRF FTELNGNPSF SKNRRPRISG LAKEMDTEAL IAISVGFPVD
SLTEEEIEAN VVSRIGGQEQ SNYIVVRNHI LARWRSNVSV WLTRDHALES IRAEHKNLVD
SAYNFLLEHG YINFGLAPAV KEAKLKSLDG VERANVVIVG AGLAGLVAAR QLVSMGFKVV
VLEGRLRPGG RVKTRKIKGD GVVAAADLGG SVLTGINGNP LGVLARQMGL PLHKVRDICP
LYLPDGKAVD ADVDSRIEVS FNKLLDRVCK LRHAMIEEVK SVDVPLGTAL EAFRSVYKVA
EDSQERMLLN WHLANLEYAN ASLMSNLSMA YWDQDDPYEM GGDHCFIPGG NERFVRALAG
DLPIFYGRTV QSIRYGIDGV RVYAGGQEFR GDMALCTVPL GVLKKGSIEF VPELPQRKKD
AIQRLGYGLL NKVAMLFPYN FWGGEIDTFG HLTEDSSMRG EFFLFYSYSS VSGGPLLVAL
VAGDAAIKFE MMSPVESVKR VLNILRGIFH PKGIVIPDPV QAVCTRWGKD CFTYGSYSYV
AIGSSGDDYD ILAESVGDGR VFFAGEATNK QYPATMHGAF LSGMREAAHI LRVARRRSLA
LSDKVNSDDE ESDGLNILFE NPDLTFGSFS AVFDPISNDL GSHALIRVKF HGDKLDSSFL
CLYGLITRKQ TIQLSELNGD GNRMNLLHRN FGVKLVGRKG LSNMGEALVS RIKAAKFNHN
VGD
//
