ID   A0A061G9Y9_THECC        Unreviewed;       833 AA.
AC   A0A061G9Y9;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   27-MAR-2024, entry version 40.
DE   SubName: Full=Pentatricopeptide repeat superfamily protein isoform 1 {ECO:0000313|EMBL:EOY26401.1};
GN   ORFNames=TCM_027991 {ECO:0000313|EMBL:EOY26401.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY26401.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOY26401.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC       {ECO:0000256|ARBA:ARBA00006643}.
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DR   EMBL; CM001884; EOY26401.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A061G9Y9; -.
DR   EnsemblPlants; EOY26401; EOY26401; TCM_027991.
DR   Gramene; EOY26401; EOY26401; TCM_027991.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_15_1_1; -.
DR   InParanoid; A0A061G9Y9; -.
DR   OMA; TGWSWVE; -.
DR   Proteomes; UP000026915; Chromosome 6.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR046849; Eplus_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 7.
DR   PANTHER; PTHR47928:SF113; DYW DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR47928; REPEAT-CONTAINING PROTEIN, PUTATIVE-RELATED; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF20430; Eplus_motif; 1.
DR   Pfam; PF01535; PPR; 5.
DR   Pfam; PF13041; PPR_2; 3.
DR   SUPFAM; SSF48452; TPR-like; 1.
DR   PROSITE; PS51375; PPR; 5.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          143..173
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          238..272
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          342..376
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          444..474
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          475..509
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          685..761
FT                   /note="DYW"
FT                   /evidence="ECO:0000259|Pfam:PF14432"
SQ   SEQUENCE   833 AA;  94451 MW;  7C657EBAD8D10CC3 CRC64;
     MAKGDWNDLT CHVWEHIASK ISNQTQVKQL HAQLIQNSLH HHYSWVALLI NACMRLRAPL
     SYTRTILHYS TATPSPDIYA FISALEYYYT LPVCKEQEVA SLCHQLLAST NKPAALYPIL
     IKSSVKAGIL FHSHLVKLGH HHDPHTRNAL MDSYAKFGPI EAARKLFDEM PGRMAEDWNS
     MISGYWKWGK EAEACCLFNL MPENKRNVVT WTAMVTGSAN MKDLITARRY FDRMPRRNVV
     SWNAMLSGYA KNGFAKEALH LFLHMIKAGD GIEPNQITWV AVISSCSSLA DPCLADSVVK
     FLDKKKIQLN SYLKTALLDM HAKCGNLETA QKIFDEFGEH RSCTTWNAMI SAYMRFGNLA
     LARELFDKMP VRNVVSWNSM IAGFAQNGQP AMAIQLFKEM IATTNLKPDE VTMVSVISVC
     GQLGALEMGN WVVNFIVENQ IKLSISGYNT LIFMYSKCGS MKDAERIFQE MKRRDTISYN
     ALVSGFGAHG RGIEAVELMS RMRKEGIEPD HITYIGVLTA CSHARLLKEG RRVFESIKFP
     AVDHYACMVD LLGRVGELDE AKRLIDHMPM EPHAGIYGSL LNASTIHKRV ELGEFAANKL
     FELEPSNSGN YVLLSNIYAS AARWGDVDWV REAMRKLGVK KTTGWSWVEH DGKVHKFIVG
     DRSHERSDDI YRLLEELCRK MGRLGYIANK SCVLRDVEDE EKEEMVGTHS EKLAVCFALL
     VSEVGAVVRV VKNLRVCQDC HTAMKMISML EGREIIMRDN NSKFYVIVLI DIKHRRNDFD
     MLLQPCLYLG EYMVKSGYSC VMDSLIIQGK GEASFGERIQ FRRVYEEQVF PAE
//