ID   A0A061GNM9_THECC        Unreviewed;       801 AA.
AC   A0A061GNM9;
DT   03-SEP-2014, integrated into UniProtKB/TrEMBL.
DT   03-SEP-2014, sequence version 1.
DT   27-MAR-2024, entry version 53.
DE   SubName: Full=Pentatricopeptide repeat (PPR) superfamily protein {ECO:0000313|EMBL:EOY31480.1};
GN   ORFNames=TCM_046928 {ECO:0000313|EMBL:EOY31480.1};
OS   Theobroma cacao (Cacao) (Cocoa).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Malvales; Malvaceae; Byttnerioideae; Theobroma.
OX   NCBI_TaxID=3641 {ECO:0000313|EMBL:EOY31480.1, ECO:0000313|Proteomes:UP000026915};
RN   [1] {ECO:0000313|EMBL:EOY31480.1, ECO:0000313|Proteomes:UP000026915}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Matina 1-6 {ECO:0000313|Proteomes:UP000026915};
RX   PubMed=23731509; DOI=10.1186/gb-2013-14-6-r53;
RA   Motamayor J.C., Mockaitis K., Schmutz J., Haiminen N., Iii D.L.,
RA   Cornejo O., Findley S.D., Zheng P., Utro F., Royaert S., Saski C.,
RA   Jenkins J., Podicheti R., Zhao M., Scheffler B.E., Stack J.C., Feltus F.A.,
RA   Mustiga G.M., Amores F., Phillips W., Marelli J.P., May G.D., Shapiro H.,
RA   Ma J., Bustamante C.D., Schnell R.J., Main D., Gilbert D., Parida L.,
RA   Kuhn D.N.;
RT   "The genome sequence of the most widely cultivated cacao type and its use
RT   to identify candidate genes regulating pod color.";
RL   Genome Biol. 14:R53.1-R53.24(2013).
CC   -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC       {ECO:0000256|ARBA:ARBA00006643}.
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DR   EMBL; CM001887; EOY31480.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A061GNM9; -.
DR   EnsemblPlants; EOY31480; EOY31480; TCM_046928.
DR   Gramene; EOY31480; EOY31480; TCM_046928.
DR   eggNOG; KOG4197; Eukaryota.
DR   HOGENOM; CLU_002706_15_1_1; -.
DR   InParanoid; A0A061GNM9; -.
DR   OMA; VYCRLNE; -.
DR   Proteomes; UP000026915; Chromosome 9.
DR   GO; GO:0043231; C:intracellular membrane-bounded organelle; IBA:GO_Central.
DR   GO; GO:0003723; F:RNA binding; IBA:GO_Central.
DR   GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR   GO; GO:0009451; P:RNA modification; IBA:GO_Central.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR   InterPro; IPR032867; DYW_dom.
DR   InterPro; IPR046848; E_motif.
DR   InterPro; IPR046849; Eplus_motif.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR045215; PPR_prot_At1g15510.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 6.
DR   PANTHER; PTHR24015:SF1695; OS06G0185800 PROTEIN; 1.
DR   PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR   Pfam; PF14432; DYW_deaminase; 1.
DR   Pfam; PF20431; E_motif; 1.
DR   Pfam; PF20430; Eplus_motif; 1.
DR   Pfam; PF01535; PPR; 5.
DR   Pfam; PF13041; PPR_2; 2.
DR   SUPFAM; SSF48452; TPR-like; 1.
DR   PROSITE; PS51375; PPR; 5.
PE   3: Inferred from homology;
KW   Reference proteome {ECO:0000313|Proteomes:UP000026915};
KW   Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT   REPEAT          190..224
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          292..326
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          393..427
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          463..493
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   REPEAT          494..528
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT   DOMAIN          709..801
FT                   /note="DYW"
FT                   /evidence="ECO:0000259|Pfam:PF14432"
FT   REGION          1..20
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..16
FT                   /note="Basic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   801 AA;  89198 MW;  CE4CEB4E582AD1C6 CRC64;
     MALTSGRRRR RRRQMFSKSI ASTYSPTRSR NFFLNLLKKS TTLPQLTQTH AQLILNGFRN
     DLSTITKLTH RLFDLNATSY ARDVFLSIPN PDLFLFNVLI KGFSNTHSIS LYTHLRKCTR
     LNPDNFTYAF AIASASTLSD EKVGMFLYEH AVVDGYGFDL FVGTAVVDFY FKIWRVELAR
     KVFDKMPERD TVLWNSMISG LVKNCCFEDA IRVFRDMLED GGIRLDSTSV AAVLPAFSEL
     QELISGMEVQ CLALKLGFHS HVYVLTGLIS LYSKGGEIEA AKLLFGEIGR PDLVSCNAMI
     SGYTSNGESE CSVRLFKQLL GSGEKVNSST IVGLIPVLSP FGYLNLTNCI HSFCVKYGFV
     SQSSVSTALT TAYSRLNEIE SARQLFDESS EKTPASWNAM ISGYTQNGLT EAAISLFQEM
     QMSKVGPNPV TLTSILSACA QLGALSLGKW VHGLVKSKSF DSNIYVSTAL IDMYAKCGSI
     REARQLFDLM LGKNVVTWNA MISGYGLHGQ GQDALRLFSE MLHSGVSPNG VTFLSLLYAC
     SHAGLVKEGE EIFRSMVHAN QFKPLAEHYA CMVDILGRAG QLEKAFKFIK EMPVEPGPAE
     WGALLGACMI HKDKKLAHVA SERLFELDPE NVGYYVLLSN LYSAERNYPL AASVRQNVKK
     RMLAKIPGCT LIEIGETPHV FTSGDRSHPQ ATEIYAMLEK LIRKMKEAGF QTETDTALHD
     VEEEEKELMV NVHSEKLAIA FGLVVTQPGT EIRIFKNLRV CVDCHTATKF ISKITERVIV
     VRDANRFHHF KDGVCSCGDY W
//