ID A0A072UJA5_MEDTR Unreviewed; 864 AA.
AC A0A072UJA5;
DT 01-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 01-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 50.
DE SubName: Full=AP2/B3 transcription factor family protein {ECO:0000313|EMBL:KEH29193.1};
GN Name=11424037 {ECO:0000313|EnsemblPlants:KEH29193};
GN OrderedLocusNames=MTR_4g028130 {ECO:0000313|EMBL:KEH29193.1};
OS Medicago truncatula (Barrel medic) (Medicago tribuloides).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; fabids; Fabales; Fabaceae; Papilionoideae; 50 kb inversion clade;
OC NPAAA clade; Hologalegina; IRL clade; Trifolieae; Medicago.
OX NCBI_TaxID=3880 {ECO:0000313|EMBL:KEH29193.1, ECO:0000313|Proteomes:UP000002051};
RN [1] {ECO:0000313|EMBL:KEH29193.1, ECO:0000313|Proteomes:UP000002051}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=A17 {ECO:0000313|EMBL:KEH29193.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH29193,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=22089132; DOI=10.1038/nature10625;
RA Young N.D., Debelle F., Oldroyd G.E., Geurts R., Cannon S.B., Udvardi M.K.,
RA Benedito V.A., Mayer K.F., Gouzy J., Schoof H., Van de Peer Y., Proost S.,
RA Cook D.R., Meyers B.C., Spannagl M., Cheung F., De Mita S.,
RA Krishnakumar V., Gundlach H., Zhou S., Mudge J., Bharti A.K., Murray J.D.,
RA Naoumkina M.A., Rosen B., Silverstein K.A., Tang H., Rombauts S.,
RA Zhao P.X., Zhou P., Barbe V., Bardou P., Bechner M., Bellec A., Berger A.,
RA Berges H., Bidwell S., Bisseling T., Choisne N., Couloux A., Denny R.,
RA Deshpande S., Dai X., Doyle J.J., Dudez A.M., Farmer A.D., Fouteau S.,
RA Franken C., Gibelin C., Gish J., Goldstein S., Gonzalez A.J., Green P.J.,
RA Hallab A., Hartog M., Hua A., Humphray S.J., Jeong D.H., Jing Y.,
RA Jocker A., Kenton S.M., Kim D.J., Klee K., Lai H., Lang C., Lin S.,
RA Macmil S.L., Magdelenat G., Matthews L., McCorrison J., Monaghan E.L.,
RA Mun J.H., Najar F.Z., Nicholson C., Noirot C., O'Bleness M., Paule C.R.,
RA Poulain J., Prion F., Qin B., Qu C., Retzel E.F., Riddle C., Sallet E.,
RA Samain S., Samson N., Sanders I., Saurat O., Scarpelli C., Schiex T.,
RA Segurens B., Severin A.J., Sherrier D.J., Shi R., Sims S., Singer S.R.,
RA Sinharoy S., Sterck L., Viollet A., Wang B.B., Wang K., Wang M., Wang X.,
RA Warfsmann J., Weissenbach J., White D.D., White J.D., Wiley G.B.,
RA Wincker P., Xing Y., Yang L., Yao Z., Ying F., Zhai J., Zhou L., Zuber A.,
RA Denarie J., Dixon R.A., May G.D., Schwartz D.C., Rogers J., Quetier F.,
RA Town C.D., Roe B.A.;
RT "The Medicago genome provides insight into the evolution of rhizobial
RT symbioses.";
RL Nature 480:520-524(2011).
RN [2] {ECO:0000313|EMBL:KEH29193.1, ECO:0000313|Proteomes:UP000002051}
RP GENOME REANNOTATION.
RC STRAIN=A17 {ECO:0000313|EMBL:KEH29193.1}, and cv. Jemalong A17
RC {ECO:0000313|EnsemblPlants:KEH29193,
RC ECO:0000313|Proteomes:UP000002051};
RX PubMed=24767513; DOI=10.1186/1471-2164-15-312;
RA Tang H., Krishnakumar V., Bidwell S., Rosen B., Chan A., Zhou S.,
RA Gentzbittel L., Childs K.L., Yandell M., Gundlach H., Mayer K.F.,
RA Schwartz D.C., Town C.D.;
RT "An improved genome release (version Mt4.0) for the model legume Medicago
RT truncatula.";
RL BMC Genomics 15:312-312(2014).
RN [3] {ECO:0000313|EnsemblPlants:KEH29193}
RP IDENTIFICATION.
RC STRAIN=cv. Jemalong A17 {ECO:0000313|EnsemblPlants:KEH29193};
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
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DR EMBL; CM001220; KEH29193.1; -; Genomic_DNA.
DR RefSeq; XP_013455146.1; XM_013599692.1.
DR AlphaFoldDB; A0A072UJA5; -.
DR EnsemblPlants; KEH29193; KEH29193; MTR_4g028130.
DR GeneID; 11424037; -.
DR Gramene; KEH29193; KEH29193; MTR_4g028130.
DR OrthoDB; 933627at2759; -.
DR Proteomes; UP000002051; Chromosome 4.
DR ExpressionAtlas; A0A072UJA5; differential.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR CDD; cd10017; B3_DNA; 1.
DR Gene3D; 3.30.40.100; -; 1.
DR Gene3D; 2.40.330.10; DNA-binding pseudobarrel domain; 1.
DR InterPro; IPR003340; B3_DNA-bd.
DR InterPro; IPR015300; DNA-bd_pseudobarrel_sf.
DR InterPro; IPR011124; Znf_CW.
DR PANTHER; PTHR46245; B3 DOMAIN-CONTAINING PROTEIN OS07G0563300; 1.
DR PANTHER; PTHR46245:SF2; B3 DOMAIN-CONTAINING TRANSCRIPTION REPRESSOR VAL2; 1.
DR Pfam; PF02362; B3; 1.
DR Pfam; PF07496; zf-CW; 1.
DR SMART; SM01019; B3; 1.
DR SUPFAM; SSF101936; DNA-binding pseudobarrel domain; 1.
DR PROSITE; PS50863; B3; 1.
DR PROSITE; PS51050; ZF_CW; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000002051};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 315..416
FT /note="TF-B3"
FT /evidence="ECO:0000259|PROSITE:PS50863"
FT DOMAIN 543..593
FT /note="CW-type"
FT /evidence="ECO:0000259|PROSITE:PS51050"
FT REGION 696..756
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 811..864
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 716..730
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 811..839
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 840..854
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 864 AA; 96268 MW; 3916C9DC903BDA11 CRC64;
MESKCCMNVV CGTSTSIRWR KGWILRSGEF ADLCDKCGSA YEQSAFCDMF HAKESGWREC
TSCGKRLHCG CVASKSQLEI LDTGGVSCIT CASTSGLQPI ASNENPNESG TAKVNNVSAQ
QCITLANQLN VRGMQVGNYA ENDGMRCWLK PHNVDFDGLS REIKPEVLPS VGEFGSTLMS
QFHRESNGSS RTGKAENDMQ DIYESLAQTN LSMTLAAPLP NPFHNVLVDE REQSKMSPPL
LLASRSRHLL PKPPRPALSP GLEGNTGMVS QIRIARPPAE GRGRNQLLPR YWPRITDQEL
QQISGDSNST IVPLFEKMLS ASDAGRIGRL VLPKACAEAY FPPISQPEGL PLRIQDVKGK
EWMFQFRFWP NNNSRMYVLE GVTPCIQSMQ LQAGDTVTFS RMDPEGKLIM GFRKATNSAS
QSQKGCSETH LNALSKKWNS VGADMDWHNV EMPESRKRDV LSLPPVLVPE KKRTRNIGSK
SKRLLIDSED ALELKLTWEE AQDLLRPPPE VKPSVVMIED HLFEEYEEPP VFGKKSIFVV
RSTGISEQWT QCDSCQKWRK LPVDVLIPPK WTCMENFWDQ SRCSCAAPNE LNPMELDNLL
RMNNEFKKQR QAAASQRPAL DRESSGLDAL ANAAVLGDDA SDSGRTPVLT TTRHPRHRPG
CSCIVCIQPP SGKGKHKPTC TCNVCMTVKR RFKTLMMRKK KRQSEREAEI AQKNQQSWRT
KDESEVDSTS RHLTPVDGSE NEARVPNELD SRNEDQVADA AKGQLDLNCQ PDREDMQAGP
NTLSMMTLLE EANLPLETYL KQNGLSSLIS EQQTNSASNV QAHTTNESEG RQNEDCCTAS
AVHEQEDSPE ENSGQDRDQN NSLS
//
