ID A0A078GE64_BRANA Unreviewed; 311 AA.
AC A0A078GE64;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 40.
DE SubName: Full=(rape) hypothetical protein {ECO:0000313|EMBL:CAF1934989.1};
DE SubName: Full=BnaC05g40000D protein {ECO:0000313|EMBL:CDY23594.1};
GN Name=BnaC05g40000D {ECO:0000313|EMBL:CDY23594.1};
GN ORFNames=DARMORV10_C05P54550.1 {ECO:0000313|EMBL:CAF1934989.1},
GN GSBRNA2T00023797001 {ECO:0000313|EMBL:CDY23594.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY23594.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY23594.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
RN [2] {ECO:0000313|EMBL:CDY23594.1}
RP NUCLEOTIDE SEQUENCE.
RA Genoscope - CEA;
RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:CAF1934989.1}
RP NUCLEOTIDE SEQUENCE.
RG Genoscope - CEA;
RA William W.;
RL Submitted (JAN-2021) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; HG994369; CAF1934989.1; -; Genomic_DNA.
DR EMBL; LK032145; CDY23594.1; -; Genomic_DNA.
DR RefSeq; XP_013749862.1; XM_013894408.1.
DR STRING; 3708.A0A078GE64; -.
DR PaxDb; 3708-A0A078GE64; -.
DR EnsemblPlants; CDY23594; CDY23594; GSBRNA2T00023797001.
DR GeneID; 106452327; -.
DR Gramene; CDY23594; CDY23594; GSBRNA2T00023797001.
DR KEGG; bna:106452327; -.
DR OMA; HANNDNA; -.
DR OrthoDB; 5001776at2759; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-UniRule.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd16872; ARID_HMGB9-like; 1.
DR CDD; cd22009; HMG-box_AtHMGB9-like; 1.
DR Gene3D; 1.10.150.60; ARID DNA-binding domain; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR InterPro; IPR001606; ARID_dom.
DR InterPro; IPR036431; ARID_dom_sf.
DR InterPro; IPR045303; ARID_HMGB9-like.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR PANTHER; PTHR46691:SF13; ARID DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR46691; HIGH MOBILITY GROUP B PROTEIN 9; 1.
DR Pfam; PF01388; ARID; 1.
DR Pfam; PF00505; HMG_box; 1.
DR SMART; SM01014; ARID; 1.
DR SMART; SM00501; BRIGHT; 1.
DR SMART; SM00398; HMG; 1.
DR SUPFAM; SSF46774; ARID-like; 1.
DR SUPFAM; SSF47095; HMG-box; 1.
DR PROSITE; PS51011; ARID; 1.
DR PROSITE; PS50118; HMG_BOX_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267};
KW Reference proteome {ECO:0000313|Proteomes:UP000028999}.
FT DOMAIN 33..124
FT /note="ARID"
FT /evidence="ECO:0000259|PROSITE:PS51011"
FT DOMAIN 227..294
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DNA_BIND 227..294
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
SQ SEQUENCE 311 AA; 34892 MW; 82AB7DEA1254BF3D CRC64;
MSTVSPCSQL VQVVPDNHNN TGDSSGVKYE DLVRNSDIFL EHLRALLGLL GNELKVPTVG
GSTLDLHRLF VEVTSRGGIA KVIKDKRWRE VIGVFKFPNT ITSASFVLRR YYFKFLFQME
QVYYLEQSAS SMKSAEEVME SLSPNLEEGT DEPQIGAVGD GVLDGKFESG YLVTMKFGSQ
LLKGVLYHHV KRPQQAMGTP PSGMPPASQR RAKKKARLTT VVDSQKPKCH RSGYNFFFAE
QYARLKPEYH GKERIITKMI GRMWGDLSES EKQVYQDKGV KDVERYRTEM LEYKSAHESG
ASASAAATMA Q
//
