ID A0A078GZS2_BRANA Unreviewed; 993 AA.
AC A0A078GZS2;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 38.
DE SubName: Full=(rape) hypothetical protein {ECO:0000313|EMBL:CAF1925179.1};
DE SubName: Full=BnaC05g09370D protein {ECO:0000313|EMBL:CDY30083.1};
GN Name=BnaC05g09370D {ECO:0000313|EMBL:CDY30083.1};
GN ORFNames=DARMORV10_C05P10740.1 {ECO:0000313|EMBL:CAF1925179.1},
GN GSBRNA2T00044638001 {ECO:0000313|EMBL:CDY30083.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY30083.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY30083.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
RN [2] {ECO:0000313|EMBL:CDY30083.1}
RP NUCLEOTIDE SEQUENCE.
RA Genoscope - CEA;
RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|EMBL:CAF1925179.1}
RP NUCLEOTIDE SEQUENCE.
RG Genoscope - CEA;
RA William W.;
RL Submitted (JAN-2021) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Membrane {ECO:0000256|ARBA:ARBA00004287};
CC Peripheral membrane protein {ECO:0000256|ARBA:ARBA00004287};
CC Cytoplasmic side {ECO:0000256|ARBA:ARBA00004287}.
CC -!- SIMILARITY: Belongs to the VPS18 family.
CC {ECO:0000256|ARBA:ARBA00010454}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; HG994369; CAF1925179.1; -; Genomic_DNA.
DR EMBL; LK032248; CDY30083.1; -; Genomic_DNA.
DR STRING; 3708.A0A078GZS2; -.
DR PaxDb; 3708-A0A078GZS2; -.
DR EnsemblPlants; CDY30083; CDY30083; GSBRNA2T00044638001.
DR Gramene; CDY30083; CDY30083; GSBRNA2T00044638001.
DR OMA; MDHGRQV; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0005768; C:endosome; IBA:GO_Central.
DR GO; GO:0030897; C:HOPS complex; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0030674; F:protein-macromolecule adaptor activity; IBA:GO_Central.
DR GO; GO:0007032; P:endosome organization; IBA:GO_Central.
DR GO; GO:0006886; P:intracellular protein transport; IEA:UniProtKB-UniRule.
DR GO; GO:0048284; P:organelle fusion; IBA:GO_Central.
DR GO; GO:0007033; P:vacuole organization; IBA:GO_Central.
DR GO; GO:0006904; P:vesicle docking involved in exocytosis; IBA:GO_Central.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR000547; Clathrin_H-chain/VPS_repeat.
DR InterPro; IPR007810; Pep3_Vps18.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR23323; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN; 1.
DR PANTHER; PTHR23323:SF26; VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 18 HOMOLOG; 1.
DR Pfam; PF00637; Clathrin; 1.
DR Pfam; PF05131; Pep3_Vps18; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50236; CHCR; 1.
PE 3: Inferred from homology;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000028999};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT DOMAIN 838..951
FT /note="RING-type"
FT /evidence="ECO:0000259|SMART:SM00184"
FT COILED 787..821
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 993 AA; 112904 MW; 48CE289A4A7D5574 CRC64;
MDQGRQVFSV DLLERYASKN RGMITCMAAG NDVIVLGTSK GWIIRHDFGV GSSYDIDLSV
GRTGDQSIHK VFVDPGGSHC IATVTGVGGA ESFYTHAKWP KPRVLSRLKG LLVNSVAWNR
QQITEVSTKE IILGTQDGQL FEMAVDEKDK REKYIKFLFE LEELPEAFMA LQMETANINS
GMRYYVMAVT PTRLYSFTGI GTLESVFASY KERAVHFMEL PGEIPNRQVE LHFFIKQRRA
VHFAWLSGTG IYHGGLNFGA QHSYPNGDEN FVESKALLDY SKLSDGTEIV KPSSMALSEY
HFLLLIGNKV KVVNRISEQI IEELQFDITA DSASRGIIGL CSDASAGLFY AYNQNSIFQV
SVIDEGRDMW KVYLDLKVFA AALANCRDPL QRDQVYLVQA EAAFADKEYL RAASFYAKIN
YVISFEEVTL KFISINEPEA LRTFLLRKLD TLSKDDKCQI TMISTWATEL YLDKINRLLL
EDDTAIENCN SEYHSVIQEF RAFMSDCKDV LDEATTMKLL ESYGRVEELV YFANLKEQYE
IVIHHYIQQG EAKKALEVLQ KSSVSDELQY KFAPELIMLD AYETVESWMA CKNLNPRRLI
TAMMRYSSEP HAKNETHEVI KYLEFCVHSL HNEDPGIHNL LLSLYAKQED DSALLRFLQC
KFGKGRENGP EFFYDPKYSL RLCLKEKRTR ACVHIYSMMS MHEEAVALAL QIDSELAMAE
ADKVEDDEDL RKKLWLMVAK HVVKQEKGAK RENIRKAIAF LKETDGLLKI EDILPFFPDF
ALIDDFKETI CSSLEDYNKQ IEQLKEEMND ATRGADNIRN DISALTQRYA VIDREEECGV
CLPKFVNVKS SMGDFRMAQG YSSSGPLAPF YVFPCGHSFH AQCLITHVTS CAHEEQAEHI
LDLQKQLTLL GSETRRDMNG NRSDEPITST TTADKLRSEL DDAIASECPF CGELMINEIT
LPFIKPEETR HSASWDLRPQ TNLANQRTIS LPV
//
