ID A0A078HVQ8_BRANA Unreviewed; 551 AA.
AC A0A078HVQ8;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 33.
DE SubName: Full=BnaC08g10680D protein {ECO:0000313|EMBL:CDY42535.1};
GN Name=BnaC08g10680D {ECO:0000313|EMBL:CDY42535.1};
GN ORFNames=GSBRNA2T00074997001 {ECO:0000313|EMBL:CDY42535.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY42535.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY42535.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
CC -!- SIMILARITY: Belongs to the PPR family. P subfamily.
CC {ECO:0000256|ARBA:ARBA00007626}.
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DR EMBL; LK032528; CDY42535.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A078HVQ8; -.
DR PaxDb; 3708-A0A078HVQ8; -.
DR EnsemblPlants; CDY42535; CDY42535; GSBRNA2T00074997001.
DR Gramene; CDY42535; CDY42535; GSBRNA2T00074997001.
DR OMA; INSARMC; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0009570; C:chloroplast stroma; IBA:GO_Central.
DR GO; GO:0003729; F:mRNA binding; IBA:GO_Central.
DR GO; GO:0042134; F:rRNA primary transcript binding; IBA:GO_Central.
DR GO; GO:0045727; P:positive regulation of translation; IBA:GO_Central.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 3.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR033443; PPR_long.
DR InterPro; IPR002625; Smr_dom.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 8.
DR PANTHER; PTHR47447; OS03G0856100 PROTEIN; 1.
DR PANTHER; PTHR47447:SF12; PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN ATP4 HOMOLOG, CHLOROPLASTIC; 1.
DR Pfam; PF12854; PPR_1; 1.
DR Pfam; PF13041; PPR_2; 1.
DR Pfam; PF13812; PPR_3; 1.
DR Pfam; PF17177; PPR_long; 1.
DR SMART; SM00463; SMR; 1.
DR SUPFAM; SSF81901; HCP-like; 1.
DR PROSITE; PS51375; PPR; 9.
DR PROSITE; PS50828; SMR; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000028999};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 23..57
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 58..92
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 93..127
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 128..162
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 163..197
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 198..232
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 233..267
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 269..303
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 304..338
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 452..537
FT /note="Smr"
FT /evidence="ECO:0000259|PROSITE:PS50828"
SQ SEQUENCE 551 AA; 61414 MW; CDEE31F53A4A7559 CRC64;
MTNPETAPLV LINLLETVKP SREVILYNVT MKVLRKSKDL EKAEKLFDEM LQRGVKPDNA
TFTTLISCAR QCGLPKRAVE WFEKMPSFGC EPDNVTLAAM IDAYGRAGNV ETALSLYDRA
RTEKWRIDAV TFSTLIRIYG YSGNYDGCLN IYEEMKSLGV KPNLVIYNRL LDSMGKAKRP
WQAKIIHRDL ISNGFEPNWS TYAALVRAYG RARYGDDALV IYREMKEKGL ELTVILYNTL
LSMCADIGYV DEAFEIFQDM KSCGTCEPDS WTFSSLITVY SCCGRVAEAE AALLEMREAG
FEPTLFVLTS VIQCYGKAKQ VDDVVRTFDQ VLELGIEPDD RFCGCLLNVM TQTPSEEIGK
LIECVEKAMP KLGHVVKMLV QDESCEEGVL KKEASELIDS IGSDVKKAYL NCLIDLCVNL
SELEKACEIL QLGMECDIYS SLQSKSATQW SLHLKSLSLG AALTALHGWM NDLTETALTS
GEEFPPLLGI NTGHGKHKYS DKGLAAVVES HLKELNAPFH EAPDKVGWFL TTSVAAKEWL
ESRRSSGEVS A
//
