ID A0A078J8B5_BRANA Unreviewed; 747 AA.
AC A0A078J8B5;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 36.
DE SubName: Full=BnaA03g58810D protein {ECO:0000313|EMBL:CDY59949.1};
DE SubName: Full=BnaA09g54100D protein {ECO:0000313|EMBL:CDY50781.1};
GN Name=BnaA03g58810D {ECO:0000313|EMBL:CDY59949.1};
GN Synonyms=BnaA09g54100D {ECO:0000313|EMBL:CDY50781.1};
GN ORFNames=GSBRNA2T00027920001 {ECO:0000313|EMBL:CDY59949.1},
GN GSBRNA2T00097479001 {ECO:0000313|EMBL:CDY50781.1};
OS Brassica napus (Rape).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=3708 {ECO:0000313|EMBL:CDY59949.1, ECO:0000313|Proteomes:UP000028999};
RN [1] {ECO:0000313|EMBL:CDY59949.1, ECO:0000313|Proteomes:UP000028999}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Darmor-bzh {ECO:0000313|Proteomes:UP000028999};
RX PubMed=25146293; DOI=10.1126/science.1253435;
RA Chalhoub B., Denoeud F., Liu S., Parkin I.A., Tang H., Wang X., Chiquet J.,
RA Belcram H., Tong C., Samans B., Correa M., Da Silva C., Just J.,
RA Falentin C., Koh C.S., Le Clainche I., Bernard M., Bento P., Noel B.,
RA Labadie K., Alberti A., Charles M., Arnaud D., Guo H., Daviaud C.,
RA Alamery S., Jabbari K., Zhao M., Edger P.P., Chelaifa H., Tack D.,
RA Lassalle G., Mestiri I., Schnel N., Le Paslier M.C., Fan G., Renault V.,
RA Bayer P.E., Golicz A.A., Manoli S., Lee T.H., Thi V.H., Chalabi S., Hu Q.,
RA Fan C., Tollenaere R., Lu Y., Battail C., Shen J., Sidebottom C.H.,
RA Wang X., Canaguier A., Chauveau A., Berard A., Deniot G., Guan M., Liu Z.,
RA Sun F., Lim Y.P., Lyons E., Town C.D., Bancroft I., Wang X., Meng J.,
RA Ma J., Pires J.C., King G.J., Brunel D., Delourme R., Renard M., Aury J.M.,
RA Adams K.L., Batley J., Snowdon R.J., Tost J., Edwards D., Zhou Y., Hua W.,
RA Sharpe A.G., Paterson A.H., Guan C., Wincker P.;
RT "Plant genetics. Early allopolyploid evolution in the post-Neolithic
RT Brassica napus oilseed genome.";
RL Science 345:950-953(2014).
RN [2] {ECO:0000313|EMBL:CDY59949.1}
RP NUCLEOTIDE SEQUENCE.
RA Genoscope - CEA;
RL Submitted (JUN-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBUNIT: Homodimer. {ECO:0000256|ARBA:ARBA00011738}.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR EMBL; LK032939; CDY50781.1; -; Genomic_DNA.
DR EMBL; LK033824; CDY59949.1; -; Genomic_DNA.
DR STRING; 3708.A0A078J8B5; -.
DR PaxDb; 3708-A0A078J8B5; -.
DR EnsemblPlants; CDY50781; CDY50781; GSBRNA2T00097479001.
DR EnsemblPlants; CDY59949; CDY59949; GSBRNA2T00027920001.
DR Gramene; CDY50781; CDY50781; GSBRNA2T00097479001.
DR Gramene; CDY59949; CDY59949; GSBRNA2T00027920001.
DR OMA; HTADNIC; -.
DR Proteomes; UP000028999; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0046983; F:protein dimerization activity; IEA:InterPro.
DR GO; GO:0009791; P:post-embryonic development; IEA:UniProt.
DR InterPro; IPR025525; hAT-like_transposase_RNase-H.
DR InterPro; IPR008906; HATC_C_dom.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR003656; Znf_BED.
DR InterPro; IPR036236; Znf_C2H2_sf.
DR PANTHER; PTHR46481:SF4; ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 39; 1.
DR PANTHER; PTHR46481; ZINC FINGER BED DOMAIN-CONTAINING PROTEIN 4; 1.
DR Pfam; PF05699; Dimer_Tnp_hAT; 1.
DR Pfam; PF14372; hAT-like_RNase-H; 1.
DR Pfam; PF02892; zf-BED; 1.
DR SMART; SM00614; ZnF_BED; 1.
DR SUPFAM; SSF57667; beta-beta-alpha zinc fingers; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50808; ZF_BED; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000028999};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00027}.
FT DOMAIN 61..129
FT /note="BED-type"
FT /evidence="ECO:0000259|PROSITE:PS50808"
FT REGION 28..53
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 564..593
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 747 AA; 84595 MW; E5C6F7A49F842B3B CRC64;
MASTQDPVNI PEDGEDIDAE DIIEETVDEV ESLETSPAPD TTAAKGKGKG KMKAAKKITK
KTRSFVWEHY TRLKNNHNKC CCNYCGKKMS CASSSGTSNL RKHILACKKY LAWKATTSAS
QHVLNEEADG LHLGKVSESV FREAANEMLV IGELPLSFID SLAFRHFCNK CKLQKPHSRR
TATRDIVEMY VRRKTLMKKI LGGKRQRLSL TADIWVAPNT GASYMVITAH FVDTNWQLKK
LIIGFKNVSD HKGVTIAAVL KECLEEWDIK RVFCITVDNA TANSNAMEIF KADFIEVNGE
ESVVLNGDYL HVRCATHIIN LIVRNGLQEV DKSVAAIRNG IQFVRPSTPR LKSFQLRVDI
EKITRGSLPL DCKTRWNSTF LMLNRAMDFK MAFDKMMAED KPYNDYFQER VDGKKRHGPP
AKDDWEVIDR FINFLVIFYQ STLVLSATNS SCSYKCYNEI VSIQSALIAM TCQGHDEELK
KKATAMMTKL GKYWDPFGEG TEMNRMVIVA SVFDPRNKMK FAQLCFDQLY GKDSFKAKQM
HDSIMSILKK LFDQYNTRLT SSLNRSATAS SSTSQSHEVG SSSSSQSQPQ PRHSCRMDFS
ARLCFQKMDA VYKEMVQETG FQESATELEL YLAENVESPK VFSGTEYDVL SWWKVNAQKY
PVLSQVAKDV LAMQISSVAS ESAFSTSGRI LDSTQSCLTH YTIEVLMCTE QWLKCEIRMN
NRGSITIEQL LEDIEDQDEL ERGNSNF
//
