ID A0A085EMX4_9FLAO Unreviewed; 488 AA.
AC A0A085EMX4;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 24-JAN-2024, entry version 44.
DE SubName: Full=RNA polymerase sigma54 factor {ECO:0000313|EMBL:KFC60569.1};
GN ORFNames=FEM08_06110 {ECO:0000313|EMBL:KFC60569.1};
OS Flavobacterium gilvum.
OC Bacteria; Bacteroidota; Flavobacteriia; Flavobacteriales;
OC Flavobacteriaceae; Flavobacterium.
OX NCBI_TaxID=1492737 {ECO:0000313|EMBL:KFC60569.1, ECO:0000313|Proteomes:UP000028636};
RN [1] {ECO:0000313|EMBL:KFC60569.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=EM1308 {ECO:0000313|EMBL:KFC60569.1};
RA Shin S.-K., Yi H.;
RT "Genome Sequence of Flavobacterium sp. EM1308.";
RL Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KFC60569.1}.
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DR EMBL; JNCP01000016; KFC60569.1; -; Genomic_DNA.
DR RefSeq; WP_035634200.1; NZ_JNCP01000016.1.
DR AlphaFoldDB; A0A085EMX4; -.
DR STRING; 1492737.EM308_05605; -.
DR KEGG; fgl:EM308_05605; -.
DR PATRIC; fig|1492737.3.peg.602; -.
DR eggNOG; COG1508; Bacteria.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000028636; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 114..306
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 328..487
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 41..108
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 56..87
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 488 AA; 56538 MW; A32ADF1652C6180A CRC64;
MLKQFLNLKI SQKLSPQQIQ LMKLIQLPTQ AFEQRLLEEM NENPALESGK EEDLYEKDEY
DTEDYDDYDD SEADRIESED INIDEYLNSD DTPDYKTQAN NYSDDDETKE TPFAAAISFH
QDLINQLNTF MLNDEERDIA EFLVGSIDDM GYIRRSIPDL VDDMAFTQGL YTTEKQVETI
LHIIHELEPT GVGARDLQEC LLLQLKHKTP TESVELATSI IENQFDSFVK KHYDKLIQKF
SISNEQLRNA IHEIERLNPK PGGSFSGNNK ITENIVPDFT IRIVEGDLEL TLNGRNAPSL
HVSKDYQEMM QTYKESKDKS NSQKDAVQFI KQKLDSAKWF IDAIKQRQDT LFVTMNAIMH
YQREYLLDGD ETRLKPMILK DIADRIGLDI STVSRVANSK YVETPYGTKL VKDFFSEAMK
NDQGEEVSTI EIKRILQNTI EEEDKKNPLP DDLLAEILKE KGYPIARRTI AKYREQLEIP
VARMRKKL
//
