ID A0A086ZL66_9BIFI Unreviewed; 1120 AA.
AC A0A086ZL66;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 24-JAN-2024, entry version 40.
DE SubName: Full=Transcription-repair coupling factor {ECO:0000313|EMBL:KFI47266.1};
DE EC=3.6.4.12 {ECO:0000313|EMBL:KFI47266.1};
DE Flags: Fragment;
GN ORFNames=BBIA_2194 {ECO:0000313|EMBL:KFI47266.1};
OS Bifidobacterium biavatii DSM 23969.
OC Bacteria; Actinomycetota; Actinomycetes; Bifidobacteriales;
OC Bifidobacteriaceae; Bifidobacterium.
OX NCBI_TaxID=1437608 {ECO:0000313|EMBL:KFI47266.1, ECO:0000313|Proteomes:UP000029108};
RN [1] {ECO:0000313|EMBL:KFI47266.1, ECO:0000313|Proteomes:UP000029108}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=DSM 23969 {ECO:0000313|EMBL:KFI47266.1,
RC ECO:0000313|Proteomes:UP000029108};
RA Ventura M., Milani C., Lugli G.A.;
RT "Genomics of Bifidobacteria.";
RL Submitted (MAR-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KFI47266.1}.
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DR EMBL; JGYN01000036; KFI47266.1; -; Genomic_DNA.
DR RefSeq; WP_035138438.1; NZ_JGYN01000036.1.
DR STRING; 1437608.GCA_000771645_00063; -.
DR eggNOG; COG1197; Bacteria.
DR Proteomes; UP000029108; Unassembled WGS sequence.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0003684; F:damaged DNA binding; IEA:InterPro.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0016787; F:hydrolase activity; IEA:UniProtKB-KW.
DR GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR CDD; cd17991; DEXHc_TRCF; 1.
DR Gene3D; 2.40.10.170; -; 1.
DR Gene3D; 3.40.50.11180; -; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 2.
DR Gene3D; 3.30.2060.10; Penicillin-binding protein 1b domain; 1.
DR Gene3D; 3.90.1150.50; Transcription-repair-coupling factor, D7 domain; 1.
DR HAMAP; MF_00969; TRCF; 1.
DR InterPro; IPR003711; CarD-like/TRCF_RID.
DR InterPro; IPR036101; CarD-like/TRCF_RID_sf.
DR InterPro; IPR011545; DEAD/DEAH_box_helicase_dom.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR004576; Mfd.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR047112; RecG/Mfd.
DR InterPro; IPR037235; TRCF-like_C_D7.
DR InterPro; IPR005118; TRCF_C.
DR InterPro; IPR041471; UvrB_inter.
DR NCBIfam; TIGR00580; mfd; 1.
DR PANTHER; PTHR47964; ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC; 1.
DR PANTHER; PTHR47964:SF1; ATP-DEPENDENT DNA HELICASE HOMOLOG RECG, CHLOROPLASTIC; 1.
DR Pfam; PF02559; CarD_TRCF_RID; 1.
DR Pfam; PF00270; DEAD; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF03461; TRCF; 1.
DR Pfam; PF17757; UvrB_inter; 1.
DR SMART; SM01058; CarD_TRCF; 1.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00982; TRCF; 1.
DR SUPFAM; SSF141259; CarD-like; 1.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 3.
DR SUPFAM; SSF143517; TRCF domain-like; 1.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
PE 3: Inferred from homology;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801, ECO:0000313|EMBL:KFI47266.1};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000029108}.
FT DOMAIN 579..740
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 765..915
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:KFI47266.1"
SQ SEQUENCE 1120 AA; 123836 MW; 951FF3634C57ADBA CRC64;
VLVVASGREA EXTVASLRSW YDGDPNDITQ LEAWETLPHE RLSPRADTVA SRMAVFRRLT
HPDASNPMFG PIRILVMPVR SLIQPVVKGL GDVEPLVFTQ GEELPLDEAS ARLVENAYTR
VDLVMDRGEF AVRGGIIDVF PPTAPHPVRI EFFGDEIDTI REFHASDQRT YGDGIKTIWA
TPCRELQLTQ AVRDRAKSLI GRIPNADDML ESIANAIPVE GMESLMPALI DDMEPVSGMF
DQHALVMLSD PEKLRRAAED LAKTANEFLA ASWHVAASGH GAGAPITFDQ ASFLDFEETV
SALAYSSHDV WKLSSFGVDA SMPNHVQLSA RTPGEYRGDE AKAAAGIEGL IDAGYHVTVT
AAAQGTLARL KRAINETGIA TFDVIRSQAI DGFVDEPAKT ALLTERDLTG RSSAAGVAKT
PKRRRKAIDL MELKPGDFVV HEQHGIGRFI GMKQREIGAG RNKSTREYLV LEYAPSKRGA
PADKLFIPTD QLDQISKYIG AEVPKLNKLG GSDWAETKAK ARKHVHEIAE DLVKLYSARQ
RTPGFAFSPD TPWQKELEDA FPYQETADQL TTIDEVKADM EKPVPMDRLI CGDVGFGKTE
IAVRAAFKAI QDGKQVAVLV PTTLLVQQHY ETFTERYEGF PVTVAAMSRF QTTKEINETI
EGLESGAVDV VIGTHKLLNP KIKFKDLGLV IIDEEQRFGV EHKETLKALR TNVDVLSLSA
TPIPRTLEMA VTGIREMSTL ATPPEDRLPV LTYVGAYEDA QVTAAVRREL LRGGQVFYVH
NRVQDISKIA AKIHELVPEA RVGIAHGKMG EKQLDQIIRD FWHRDIDVLV CTTIIETGLD
ISNANTLIVD HADKFGLSQL HQLRGRVGRG RERAYAYFLY DPTKPMTQQS HDRLATIAQN
TALGSGFDVA MKDLELRGTG NLLGDEQSGH IEGVGFDLYI RMVSEAVEAY KAPEQSVEPL
AVTIDLPIEA SIPVDYIDSD KLRLEAYRKL AAAHTEDDLR ELAEELTDRY GKLPEEFETL
FGVARLRMKA RKLGISEIIA QGRNVRVGKI DPPESIQMRI NRIYKGAQYR ALTHTYLIPA
PFAGSLGSGP MSGEMVMDWT SDLLNDFAWT TPSSKRQSRL
//
