ID A0A087GTA4_ARAAL Unreviewed; 487 AA.
AC A0A087GTA4;
DT 29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT 29-OCT-2014, sequence version 1.
DT 27-MAR-2024, entry version 32.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN OrderedLocusNames=AALP_Aa6g331900 {ECO:0000313|EMBL:KFK33106.1};
OS Arabis alpina (Alpine rock-cress).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis.
OX NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK33106.1, ECO:0000313|Proteomes:UP000029120};
RN [1] {ECO:0000313|Proteomes:UP000029120}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120};
RX PubMed=27246759; DOI=10.1038/nplants.2014.23;
RA Willing E.M., Rawat V., Mandakova T., Maumus F., James G.V.,
RA Nordstroem K.J., Becker C., Warthmann N., Chica C., Szarzynska B.,
RA Zytnicki M., Albani M.C., Kiefer C., Bergonzi S., Castaings L.,
RA Mateos J.L., Berns M.C., Bujdoso N., Piofczyk T., de Lorenzo L.,
RA Barrero-Sicilia C., Mateos I., Piednoel M., Hagmann J., Chen-Min-Tao R.,
RA Iglesias-Fernandez R., Schuster S.C., Alonso-Blanco C., Roudier F.,
RA Carbonero P., Paz-Ares J., Davis S.J., Pecinka A., Quesneville H.,
RA Colot V., Lysak M.A., Weigel D., Coupland G., Schneeberger K.;
RT "Genome expansion of Arabis alpina linked with retrotransposition and
RT reduced symmetric DNA methylation.";
RL Nat. Plants 1:14023-14023(2015).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM002874; KFK33106.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A087GTA4; -.
DR EnsemblPlants; KFK33106; KFK33106; AALP_AA6G331900.
DR Gramene; KFK33106; KFK33106; AALP_AA6G331900.
DR eggNOG; KOG4197; Eukaryota.
DR OMA; DSRNYIM; -.
DR OrthoDB; 649126at2759; -.
DR Proteomes; UP000029120; Chromosome 6.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR046849; Eplus_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 1.
DR PANTHER; PTHR24015:SF739; OS03G0644200 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF20430; Eplus_motif; 1.
DR Pfam; PF01535; PPR; 3.
DR Pfam; PF13041; PPR_2; 1.
DR PROSITE; PS51375; PPR; 2.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000029120};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 179..213
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 214..249
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 395..487
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 487 AA; 54760 MW; 74B80D94479D4882 CRC64;
MLMSSVVCFR PNEVTFLSII SACVYERSRE EGRCVHGLVM KSGVLEEVKV VNALVNWYGK
TGDLASSCRL FEDLSVKNLV SWNTMILIHL LNGLAEEGLA YFNLSRKIGN MPDQAAFLAV
LRVCEGVGVV KLAQGVHGLI VLSGFNANDC ITTALLDLYS KLGRLEDSSS VFREITCPDS
LAWTAMLAAY ATHGYGKDAI KHFEVMVQYG ISPDHVTFTH LLSACSHSGL VEEGKHYFAE
MSRKYGIEPR LDHYSCMVDL MGRSGLLQEA YRLIEEMPME ASSGVWGALL GACRVYGNTQ
LGLKAAERLF ELEPCDGRNY VMLSNIYAAS CQWKDVSRTR KLMKQKGLVR AKGCSYIEHG
NKIHKFVVGD WSHPESDKIQ KKLKEIRKKM KSELGFKSRT EFVLHDVDED VKEEMINQHS
EKIAMAFGIL VISPMETIII RKNLRICGDC HETAKAISLI ENRRLVIRDT KRFHHFSQGS
CSCKDYW
//
