ID   A0A087GU98_ARAAL        Unreviewed;       604 AA.
AC   A0A087GU98;
DT   29-OCT-2014, integrated into UniProtKB/TrEMBL.
DT   29-OCT-2014, sequence version 1.
DT   27-MAR-2024, entry version 38.
DE   RecName: Full=Zinc finger PHD-type domain-containing protein {ECO:0000259|SMART:SM00249};
GN   OrderedLocusNames=AALP_Aa5g015600 {ECO:0000313|EMBL:KFK33450.1};
OS   Arabis alpina (Alpine rock-cress).
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Arabideae; Arabis.
OX   NCBI_TaxID=50452 {ECO:0000313|EMBL:KFK33450.1, ECO:0000313|Proteomes:UP000029120};
RN   [1] {ECO:0000313|Proteomes:UP000029120}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=cv. Pajares {ECO:0000313|Proteomes:UP000029120};
RX   PubMed=27246759; DOI=10.1038/nplants.2014.23;
RA   Willing E.M., Rawat V., Mandakova T., Maumus F., James G.V.,
RA   Nordstroem K.J., Becker C., Warthmann N., Chica C., Szarzynska B.,
RA   Zytnicki M., Albani M.C., Kiefer C., Bergonzi S., Castaings L.,
RA   Mateos J.L., Berns M.C., Bujdoso N., Piofczyk T., de Lorenzo L.,
RA   Barrero-Sicilia C., Mateos I., Piednoel M., Hagmann J., Chen-Min-Tao R.,
RA   Iglesias-Fernandez R., Schuster S.C., Alonso-Blanco C., Roudier F.,
RA   Carbonero P., Paz-Ares J., Davis S.J., Pecinka A., Quesneville H.,
RA   Colot V., Lysak M.A., Weigel D., Coupland G., Schneeberger K.;
RT   "Genome expansion of Arabis alpina linked with retrotransposition and
RT   reduced symmetric DNA methylation.";
RL   Nat. Plants 1:14023-14023(2015).
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DR   EMBL; CM002873; KFK33450.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A087GU98; -.
DR   EnsemblPlants; KFK33450; KFK33450; AALP_AA5G015600.
DR   Gramene; KFK33450; KFK33450; AALP_AA5G015600.
DR   eggNOG; ENOG502SFKZ; Eukaryota.
DR   OMA; HTECAFL; -.
DR   OrthoDB; 671761at2759; -.
DR   Proteomes; UP000029120; Chromosome 5.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   GO; GO:0006281; P:DNA repair; IEA:UniProtKB-KW.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR   InterPro; IPR046349; C1-like_sf.
DR   InterPro; IPR004146; DC1.
DR   InterPro; IPR001965; Znf_PHD.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   PANTHER; PTHR32410:SF153; CHP-RICH ZINC FINGER PROTEIN-LIKE-RELATED; 1.
DR   PANTHER; PTHR32410; CYSTEINE/HISTIDINE-RICH C1 DOMAIN FAMILY PROTEIN; 1.
DR   Pfam; PF03107; C1_2; 5.
DR   SMART; SM00249; PHD; 4.
DR   SUPFAM; SSF57889; Cysteine-rich domain; 4.
PE   4: Predicted;
KW   DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW   DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Reference proteome {ECO:0000313|Proteomes:UP000029120};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771}.
FT   DOMAIN          110..184
FT                   /note="Zinc finger PHD-type"
FT                   /evidence="ECO:0000259|SMART:SM00249"
FT   DOMAIN          220..279
FT                   /note="Zinc finger PHD-type"
FT                   /evidence="ECO:0000259|SMART:SM00249"
FT   DOMAIN          360..452
FT                   /note="Zinc finger PHD-type"
FT                   /evidence="ECO:0000259|SMART:SM00249"
FT   DOMAIN          503..574
FT                   /note="Zinc finger PHD-type"
FT                   /evidence="ECO:0000259|SMART:SM00249"
SQ   SEQUENCE   604 AA;  69875 MW;  811099D258A1EEB1 CRC64;
     MDLVGEFHKV EIDGKPFLLY HNILKPSPQI HNPNSSTQIA IDSCDDLPFE PLFLCPRRRA
     RLLLNLPRNR EIKEVFLKYN TSPLLDDTTS GHHALPLFWC NNKEADPEGE CYTCKIPKVG
     TNYYFCVECD KRFHKECVEL PLEISYPSHP KHSLKLYYSQ YRSDLCIYCR ERATYLVYYC
     ALCDVYMHVL CAQETIPFFI DQPKRHDHTL TLFPRLASLA CNICALVKCH LTYACSICNF
     LVHKDCLDIP QTIRICRHHH RVSFTFSLPF ENWSCGVCRR VVDSDYGAYS CKVCSGYVVH
     TKCALRKDIW DGIELEGVPE EDEGLELEPF KRIADGVILH FTHDHQLILE LNGVYDGNKY
     CQACALPIYN ENFYVCVECD FILHETCVEA PRKKFHPLHS HPLQLETIHD EDGFSVYMRC
     AFISEPFNYQ GHQHPLFLAL DPEEKPLCHI CKSTDDDIKV LNCIECDFII CFLCATLPYM
     ARYKHDKHYL TFCDGDEASD SDWCELCEGN LAIGVKRGFY KCNDCCTTLH IDCLFGDSPY
     MKPGQQIKVG RDGKYEIHIL RNNSVSRPIC MECDIYCPYP IFYIYNGRGA LCSITCIRDY
     AAIR
//