ID A0A093R038_PHACA Unreviewed; 409 AA.
AC A0A093R038;
DT 26-NOV-2014, integrated into UniProtKB/TrEMBL.
DT 26-NOV-2014, sequence version 1.
DT 27-MAR-2024, entry version 37.
DE SubName: Full=Regulator of nonsense transcripts 3A {ECO:0000313|EMBL:KFW89532.1};
DE Flags: Fragment;
GN ORFNames=N336_08649 {ECO:0000313|EMBL:KFW89532.1};
OS Phalacrocorax carbo (Great cormorant) (Pelecanus carbo).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Suliformes; Phalacrocoracidae;
OC Phalacrocorax.
OX NCBI_TaxID=9209 {ECO:0000313|EMBL:KFW89532.1, ECO:0000313|Proteomes:UP000053238};
RN [1] {ECO:0000313|EMBL:KFW89532.1, ECO:0000313|Proteomes:UP000053238}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=BGI_N336 {ECO:0000313|EMBL:KFW89532.1};
RA Zhang G., Li C.;
RT "Genome evolution of avian class.";
RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the RENT3 family.
CC {ECO:0000256|ARBA:ARBA00005991}.
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DR EMBL; KL423241; KFW89532.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A093R038; -.
DR Proteomes; UP000053238; Unassembled WGS sequence.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0000184; P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; IEA:InterPro.
DR CDD; cd12727; RRM_like_Smg4_UPF3A; 1.
DR Gene3D; 3.30.70.330; -; 1.
DR InterPro; IPR012677; Nucleotide-bd_a/b_plait_sf.
DR InterPro; IPR035979; RBD_domain_sf.
DR InterPro; IPR039722; Upf3.
DR InterPro; IPR005120; UPF3_dom.
DR PANTHER; PTHR13112:SF2; REGULATOR OF NONSENSE TRANSCRIPTS 3A; 1.
DR PANTHER; PTHR13112; UPF3 REGULATOR OF NONSENSE TRANSCRIPTS-LIKE PROTEIN; 1.
DR Pfam; PF03467; Smg4_UPF3; 1.
DR SUPFAM; SSF54928; RNA-binding domain, RBD; 1.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000053238}.
FT DOMAIN 2..157
FT /note="UPF3"
FT /evidence="ECO:0000259|Pfam:PF03467"
FT REGION 182..203
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 217..300
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 353..395
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 217..247
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 259..300
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 353..368
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 377..394
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:KFW89532.1"
FT NON_TER 409
FT /evidence="ECO:0000313|EMBL:KFW89532.1"
SQ SEQUENCE 409 AA; 48941 MW; B34B7290E665707F CRC64;
QVVIRRLPPC LTKEQLEEQL HPLPAHDYFE FCTADPSLYP HLYSRAYINF RNPEDILLFR
DRFDGYVFID NKGLEYPAVV EFAPFQKISK KKLKKKDAKA GSIEDDPEYR KFLESYCADE
EKICANPEIL LGEIEAKTRE LIARRTTPLL EYIKNRKLEK QRIREEKREE RRRRELEKKR
LREEEKRKRR EEERRKRKEV EKQKKISEKE IRIKLLKKPE KGDELASEKH KEKGEEADTE
ENKWDKSPGS GSIKSKSLEA SLKELKEKSQ NDSDKEQRDL ERRFRDKEPE RQRYRLDDGR
KHRAHYEFDK FVRRNEEELK WGKGYNQDRG KKGNYNYSFT VEAVDKLGKE DKCDDMASKK
ERIRNKDRPA MQLYQPGART RTHTGSTSKT YDCSGKSFED ALDKKYEAD
//
