ID A0A093R911_PHACA Unreviewed; 906 AA.
AC A0A093R911;
DT 26-NOV-2014, integrated into UniProtKB/TrEMBL.
DT 26-NOV-2014, sequence version 1.
DT 27-MAR-2024, entry version 34.
DE RecName: Full=DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00012418};
DE EC=2.7.7.6 {ECO:0000256|ARBA:ARBA00012418};
DE Flags: Fragment;
GN ORFNames=N336_12932 {ECO:0000313|EMBL:KFW95055.1};
OS Phalacrocorax carbo (Great cormorant) (Pelecanus carbo).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
OC Coelurosauria; Aves; Neognathae; Suliformes; Phalacrocoracidae;
OC Phalacrocorax.
OX NCBI_TaxID=9209 {ECO:0000313|EMBL:KFW95055.1, ECO:0000313|Proteomes:UP000053238};
RN [1] {ECO:0000313|EMBL:KFW95055.1, ECO:0000313|Proteomes:UP000053238}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=BGI_N336 {ECO:0000313|EMBL:KFW95055.1};
RA Zhang G., Li C.;
RT "Genome evolution of avian class.";
RL Submitted (APR-2014) to the EMBL/GenBank/DDBJ databases.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a ribonucleoside 5'-triphosphate + RNA(n) = diphosphate +
CC RNA(n+1); Xref=Rhea:RHEA:21248, Rhea:RHEA-COMP:14527, Rhea:RHEA-
CC COMP:17342, ChEBI:CHEBI:33019, ChEBI:CHEBI:61557, ChEBI:CHEBI:140395;
CC EC=2.7.7.6; Evidence={ECO:0000256|ARBA:ARBA00024550};
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DR EMBL; KL444445; KFW95055.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A093R911; -.
DR Proteomes; UP000053238; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR GO; GO:0003899; F:DNA-directed 5'-3' RNA polymerase activity; IEA:UniProtKB-EC.
DR GO; GO:0006351; P:DNA-templated transcription; IEA:InterPro.
DR CDD; cd00084; HMG-box_SF; 1.
DR CDD; cd02735; RNAP_I_Rpa1_C; 1.
DR Gene3D; 1.10.132.30; -; 1.
DR Gene3D; 1.10.357.120; -; 1.
DR Gene3D; 3.30.70.2850; -; 1.
DR Gene3D; 6.10.250.2940; -; 1.
DR InterPro; IPR047107; DNA-dir_RNA_pol1_lsu_C.
DR InterPro; IPR045867; DNA-dir_RpoC_beta_prime.
DR InterPro; IPR007083; RNA_pol_Rpb1_4.
DR InterPro; IPR007081; RNA_pol_Rpb1_5.
DR InterPro; IPR038120; Rpb1_funnel_sf.
DR PANTHER; PTHR19376; DNA-DIRECTED RNA POLYMERASE; 1.
DR PANTHER; PTHR19376:SF11; DNA-DIRECTED RNA POLYMERASE I SUBUNIT RPA1; 1.
DR Pfam; PF05000; RNA_pol_Rpb1_4; 1.
DR Pfam; PF04998; RNA_pol_Rpb1_5; 1.
DR SUPFAM; SSF64484; beta and beta-prime subunits of DNA dependent RNA-polymerase; 1.
PE 4: Predicted;
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478,
KW ECO:0000313|EMBL:KFW95055.1};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000053238};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 61..157
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF05000"
FT DOMAIN 164..854
FT /note="RNA polymerase Rpb1"
FT /evidence="ECO:0000259|Pfam:PF04998"
FT REGION 569..679
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 575..596
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 599..613
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 614..630
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 644..662
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:KFW95055.1"
FT NON_TER 906
FT /evidence="ECO:0000313|EMBL:KFW95055.1"
SQ SEQUENCE 906 AA; 103236 MW; E31451A330EEA043 CRC64;
FLTGIEDILV KPEADHKRQK IIEKSSQHGI EAVRAALNLP ETASCEEVQG KWQDAHLCKD
QRDFNMVDLK FKEEVNNYNN EVNKVCMPLG LHRSFPENNL QLMVQSGAKG STVNTMQISC
LLGQIELEGR RPPLMASGKS LPCFQPYDFS PSSGGFVTGR FLTGIKPSEF FFHCMAGREG
LVDTAVKTSR SGYLQRCIIK HLEGLVVQYD LTVRDSDGSV VQFLYGEDGL DIPKTQFLQP
EQFPFIAENY EVIQKTNRLD EALARMECHQ ANQQFKAIKK WRTRHQNSVQ REGGFLMFSR
KKMASVKAQT PGGEIKNGRD PATLQLLKMW YELDEKKRRK YLKKTNRCPD PSLGVWRPDT
YFASVSETFE NGVENYLNKW ESENRQSYMR PGLSSDRLKD LLFLKWQRSL CNPGEAVGLL
AAQSIGEPST QMTLNTFHFA GRGEMNVTLG IPRLREILMV ASANIKTPTM SVPVFNTKKA
LKKVKQLKKK LTRVCLAEVL QKVEIEESLR VKCKQNKHHL YKIKFHFLPH EYYREEKCVK
PREILYFMET RFFKIFLEAI KRKNAKMASF TEVSTRKATR KDLDSDQDKT QNNQEAPAEE
EENIVDAEAD EGDGDATEAK RRKNQEEENG EGNIDENLED EGAESEKEER TPSAEDQIGA
DGDEPQHPSF MSQTKKEKDR LLQSAELRVN AVLDSHPSIQ DYSFDTENEL WCEVSLTLPL
MKVYFDLSSL LVSLARSTVI HEVKGITRCL LNESTNKQGE TELVLHTEGI NLVELFRYSD
ILDLNRLYSN DIHAMAKNYG IESALRVIVK EIKDVFAVYG IVVDPRHLSL VADYMCFEGF
YKPLNRFGIQ SNSSPLQQMT FETSYKFLKE ATMMGAHDEL RSPSACLVVG KVVKGGTGLF
DLKQPL
//
