ID A0A0D2PAD6_GOSRA Unreviewed; 1123 AA.
AC A0A0D2PAD6;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 43.
DE RecName: Full=Phytochrome {ECO:0000256|PIRNR:PIRNR000084};
GN ORFNames=B456_007G166300 {ECO:0000313|EMBL:KJB42732.1}, Gorai_018890
GN {ECO:0000313|EMBL:MBA0590174.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB42732.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB42732.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
RN [2] {ECO:0000313|EMBL:MBA0590174.1, ECO:0000313|Proteomes:UP000593578}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=8 {ECO:0000313|EMBL:MBA0590174.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0590174.1};
RX PubMed=30476109;
RA Grover C.E., Arick M.A. 2nd, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Frelichowski J.E., Scheffler J.A., Scheffler B.E.,
RA Wendel J.F.;
RT "Insights into the Evolution of the New World Diploid Cottons (Gossypium,
RT Subgenus Houzingenia) Based on Genome Sequencing.";
RL Genome Biol. Evol. 11:53-71(2019).
RN [3] {ECO:0000313|EMBL:MBA0590174.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=8 {ECO:0000313|EMBL:MBA0590174.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0590174.1};
RA Grover C.E., Arick M.A. II, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Scheffler J.A., Scheffler B.E., Wendel J.F.;
RL Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- FUNCTION: Regulatory photoreceptor which exists in two forms that are
CC reversibly interconvertible by light: the Pr form that absorbs
CC maximally in the red region of the spectrum and the Pfr form that
CC absorbs maximally in the far-red region.
CC {ECO:0000256|PIRNR:PIRNR000084}.
CC -!- PTM: Contains one covalently linked phytochromobilin chromophore.
CC {ECO:0000256|PIRSR:PIRSR000084-50}.
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235, ECO:0000256|PIRNR:PIRNR000084}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; CM001746; KJB42732.1; -; Genomic_DNA.
DR EMBL; CM001746; KJB42734.1; -; Genomic_DNA.
DR EMBL; JABEZZ010000007; MBA0590174.1; -; Genomic_DNA.
DR RefSeq; XP_012491029.1; XM_012635575.1.
DR RefSeq; XP_012491030.1; XM_012635576.1.
DR RefSeq; XP_012491031.1; XM_012635577.1.
DR AlphaFoldDB; A0A0D2PAD6; -.
DR STRING; 29730.A0A0D2PAD6; -.
DR EnsemblPlants; KJB42732; KJB42732; B456_007G166300.
DR EnsemblPlants; KJB42734; KJB42734; B456_007G166300.
DR GeneID; 105803411; -.
DR Gramene; KJB42732; KJB42732; B456_007G166300.
DR Gramene; KJB42734; KJB42734; B456_007G166300.
DR KEGG; gra:105803411; -.
DR eggNOG; ENOG502QT1B; Eukaryota.
DR OrthoDB; 1770905at2759; -.
DR Proteomes; UP000032304; Chromosome 7.
DR Proteomes; UP000593578; Unassembled WGS sequence.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IEA:UniProt.
DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0042803; F:protein homodimerization activity; IEA:InterPro.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0009585; P:red, far-red light phototransduction; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd16932; HATPase_Phy-like; 1.
DR CDD; cd00082; HisKA; 1.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 1.10.287.130; -; 1.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.565.10; Histidine kinase-like ATPase, C-terminal domain; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR003594; HATPase_C.
DR InterPro; IPR036890; HATPase_C_sf.
DR InterPro; IPR005467; His_kinase_dom.
DR InterPro; IPR003661; HisK_dim/P.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR044767; Phy_HATPase-like.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR012129; Phytochrome_A-E.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 2.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02518; HATPase_c; 1.
DR Pfam; PF00512; HisKA; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR PIRSF; PIRSF000084; Phytochrome; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00387; HATPase_c; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55874; ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase; 1.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50109; HIS_KIN; 1.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991, ECO:0000256|PIRNR:PIRNR000084};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Receptor {ECO:0000256|ARBA:ARBA00023170, ECO:0000256|PIRNR:PIRNR000084};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW ECO:0000256|PIRNR:PIRNR000084}.
FT DOMAIN 219..388
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 613..683
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 755..798
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 897..1118
FT /note="Histidine kinase"
FT /evidence="ECO:0000259|PROSITE:PS50109"
FT REGION 1..23
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 324
FT /ligand="phytochromobilin"
FT /ligand_id="ChEBI:CHEBI:189064"
FT /note="covalent"
FT /evidence="ECO:0000256|PIRSR:PIRSR000084-50"
SQ SEQUENCE 1123 AA; 125395 MW; 48A9602B23C92565 CRC64;
MSSMSTNKSN CSRSSSARSK QNARVIAQTT IDAKLHVDFE ESKRLFDYST SIDFNISSST
SNVPSSTVSA YLQKMQRGSL IQPFGCLIAV DEQNFTVLAY SENAPEMLDL APHAVPNIEQ
QEALTYGSDV RTLFSSPGAT ALQKAANFGE VNLLNPILVH CKTSGKPFYA ILHRIEAALV
IDLEPVNPAE VPVTAAGALK SYKLAAKAIS RLQSLPSGNI SLLCDVLVKE VSDLTGYDRI
MVYKFHEDEH GEVIAESRRP DLEPYLGLHY PATDIPQASR FLFMKNKIRM ICDCSAQPVK
VIQDKGLAQP LSLCGSTLRS PHGCHAQYMA SMGSIASLVM SVTINENDDE MDSEQDKGRK
LWGLVVCHHT SPRFVPFPLR YACEFLIQVF GVQINKEVDL AAQMREKHIL QTQTVLCDML
LRDSPVGIVT KSPNVMDLVK CDGAALYYRQ KFWLLGVTPT KAQIRDIAEW LLEYHSSSTG
LSTDSLMEAG YPGASVLGEA VCGMAAVKIT SKDFLFWFRS HTAKEIKWGG AKHDPGGKDD
GRKMHPRSSF KAFLEVVKWR SLPWEDIEMD AIHSLQLILK GSLQDEVADD SKMIVNVPSI
DDRIQRVDEL RIVTNEMVRL IETAAVPIFA VDSSGNINGW NSKAAELTDL TIEQAIGMPL
FDLVEDDSVD VVKNMLSLAL EGIEERSIEI KLRTFGCQEN NGPIILVVNA CCSRDLKENV
VGICFVGQDL TSQKMAMNKY TRVQGDYVGI MRNPSALIPP IFMIDEVGRC LEWNDAMQKL
TGMKREEAID RMLLGEVFTV DKFGCRVKDH DTFTKLRILF NGITAGEDAD KLLFGFFDQE
GKFVEVLLSA SRRTDANGRI TGILCFLHVA SPELQYALQV QKISEQAAAS SLNKLAYIRQ
ELRKPLKGIV LMQGLMGDSD LSSNQRQLLR TSVMCREQMA KIVDDTDIES IEECYMEMDS
GEFNLGEALE AVLKQVMLMS QERQVQVIQD LPPEVSSMYL YGDNLRLQQV LSDFLTNALL
FTPVFEESSV SFRVIPRKER IGTKIQIVYL EFRITHPAPG IPEDLIREMF HQRQGVSREG
LGLYISQKLV KIMNGTVQYL REAERSSFII FLEFPLARLL GHH
//
