ID A0A0D2T7N6_GOSRA Unreviewed; 859 AA.
AC A0A0D2T7N6;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 42.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN ORFNames=B456_008G269700 {ECO:0000313|EMBL:KJB52594.1}, Gorai_010548
GN {ECO:0000313|EMBL:MBA0593613.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB52594.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB52594.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
RN [2] {ECO:0000313|EMBL:MBA0593613.1, ECO:0000313|Proteomes:UP000593578}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=8 {ECO:0000313|EMBL:MBA0593613.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0593613.1};
RX PubMed=30476109;
RA Grover C.E., Arick M.A. 2nd, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Frelichowski J.E., Scheffler J.A., Scheffler B.E.,
RA Wendel J.F.;
RT "Insights into the Evolution of the New World Diploid Cottons (Gossypium,
RT Subgenus Houzingenia) Based on Genome Sequencing.";
RL Genome Biol. Evol. 11:53-71(2019).
RN [3] {ECO:0000313|EMBL:MBA0593613.1}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=8 {ECO:0000313|EMBL:MBA0593613.1};
RC TISSUE=Leaf {ECO:0000313|EMBL:MBA0593613.1};
RA Grover C.E., Arick M.A. II, Thrash A., Conover J.L., Sanders W.S.,
RA Peterson D.G., Scheffler J.A., Scheffler B.E., Wendel J.F.;
RL Submitted (APR-2020) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR EMBL; CM001747; KJB52594.1; -; Genomic_DNA.
DR EMBL; JABEZZ010000008; MBA0593613.1; -; Genomic_DNA.
DR RefSeq; XP_012440013.1; XM_012584559.1.
DR AlphaFoldDB; A0A0D2T7N6; -.
DR EnsemblPlants; KJB52594; KJB52594; B456_008G269700.
DR GeneID; 105765459; -.
DR Gramene; KJB52594; KJB52594; B456_008G269700.
DR KEGG; gra:105765459; -.
DR eggNOG; KOG4197; Eukaryota.
DR OMA; SEFFPIG; -.
DR OrthoDB; 447472at2759; -.
DR Proteomes; UP000032304; Chromosome 8.
DR Proteomes; UP000593578; Unassembled WGS sequence.
DR GO; GO:0003729; F:mRNA binding; IEA:EnsemblPlants.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 5.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 6.
DR PANTHER; PTHR24015:SF739; OS03G0644200 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 3.
DR PROSITE; PS51375; PPR; 9.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 108..138
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 140..174
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 243..277
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 349..384
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 420..450
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 451..485
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 521..551
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 552..586
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 587..622
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 767..859
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
FT REGION 1..29
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 859 AA; 96056 MW; 40A0F1EBDF7BB2C7 CRC64;
MMAMVNLSLP APAKSPSRPP PKLSSQSSVP LSVNRSVNFE PLRHRLIKHL DAGHLHKAIS
TLDVMASHNA HQDLVTYSLL LKACIRSRDF QLGKLVHCHL TESKLELDSV LFNSLISLYS
KAGDWTKARE IFESMGNKRD LVSWSAMISC FANNKMSFEA ILTFLYMLDN GFLPNEYCFT
AVIRACSTSE FFPIGEIILG FLVKTGYLDF DTNVGCALID MFVKGNSDLE SAFKVFDKMP
DRNVVAWTLM ITRCTQLSYP SGAIELFVDM VLGGYMPDRF TLSGIISACT ELESESLSLG
KQLHSWVIRS GFASDVCIGC SLVDMYAKCT IDGSLDDSRR VFDRMENHNV MSWTAIITGY
VQCGGRDMEA IELFCKMIEG PVPPNHFTFS SVLKACGNLS DSRAGEQFYA HAVKHGFASD
DYVGNSLISM YAKSGRMDDA QKAFESLFEK NLDSYNTVVD AYAKNLDSEG AFELFHEISD
FGVEVNAFTF TSLLSGASSI GAIGKGEQIH ARLLKSGFQS NQCICNALIS MYARCGHIEA
AFQVFNEMGD RNVITWTSMI TGFAKHGFAA RALEIFHEML KAGIRPNEIT YIAVLSACSH
AGLVSEGWEI FKSMHKEHGI APRMEHYACM VDLLGRSGLL REAIEFINKM PCTPDALVWR
TFLGACRVHH DKELGEHSAK MILQQGPHDT AAHILLSNLY ASSGQWEDVA RIRKNMKERN
LIKEAGCSWI EVDNKIHRFH VADTSHPQVQ EIYDKLDEMA LKIKGLGYVP NTDFVLHELE
EEQKEQFVFQ HSEKIAVAFG LITTSRPKPI RVFKNLRVCG DCHTAIKYIS MATGREIVLR
DSNRFHHIKN GTCSCNDYW
//
