ID A0A0D2TSQ1_GOSRA Unreviewed; 1512 AA.
AC A0A0D2TSQ1;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE RecName: Full=Jacalin-type lectin domain-containing protein {ECO:0000259|PROSITE:PS51752};
GN ORFNames=B456_009G198200 {ECO:0000313|EMBL:KJB58186.1};
OS Gossypium raimondii (New World cotton).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium.
OX NCBI_TaxID=29730 {ECO:0000313|EMBL:KJB58186.1, ECO:0000313|Proteomes:UP000032304};
RN [1] {ECO:0000313|EMBL:KJB58186.1, ECO:0000313|Proteomes:UP000032304}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RX PubMed=23257886; DOI=10.1038/nature11798;
RA Paterson A.H., Wendel J.F., Gundlach H., Guo H., Jenkins J., Jin D.,
RA Llewellyn D., Showmaker K.C., Shu S., Udall J., Yoo M.J., Byers R.,
RA Chen W., Doron-Faigenboim A., Duke M.V., Gong L., Grimwood J., Grover C.,
RA Grupp K., Hu G., Lee T.H., Li J., Lin L., Liu T., Marler B.S., Page J.T.,
RA Roberts A.W., Romanel E., Sanders W.S., Szadkowski E., Tan X., Tang H.,
RA Xu C., Wang J., Wang Z., Zhang D., Zhang L., Ashrafi H., Bedon F.,
RA Bowers J.E., Brubaker C.L., Chee P.W., Das S., Gingle A.R., Haigler C.H.,
RA Harker D., Hoffmann L.V., Hovav R., Jones D.C., Lemke C., Mansoor S.,
RA ur Rahman M., Rainville L.N., Rambani A., Reddy U.K., Rong J.K.,
RA Saranga Y., Scheffler B.E., Scheffler J.A., Stelly D.M., Triplett B.A.,
RA Van Deynze A., Vaslin M.F., Waghmare V.N., Walford S.A., Wright R.J.,
RA Zaki E.A., Zhang T., Dennis E.S., Mayer K.F., Peterson D.G., Rokhsar D.S.,
RA Wang X., Schmutz J.;
RT "Repeated polyploidization of Gossypium genomes and the evolution of
RT spinnable cotton fibres.";
RL Nature 492:423-427(2012).
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
CC -!- SIMILARITY: Belongs to the jacalin lectin family.
CC {ECO:0000256|ARBA:ARBA00006568}.
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DR EMBL; CM001748; KJB58186.1; -; Genomic_DNA.
DR STRING; 29730.A0A0D2TSQ1; -.
DR EnsemblPlants; KJB58186; KJB58186; B456_009G198200.
DR Gramene; KJB58186; KJB58186; B456_009G198200.
DR eggNOG; KOG4197; Eukaryota.
DR Proteomes; UP000032304; Chromosome 9.
DR GO; GO:0030246; F:carbohydrate binding; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR CDD; cd09612; Jacalin; 3.
DR Gene3D; 2.100.10.30; Jacalin-like lectin domain; 3.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 6.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR001229; Jacalin-like_lectin_dom.
DR InterPro; IPR033734; Jacalin-like_lectin_dom_plant.
DR InterPro; IPR036404; Jacalin-like_lectin_dom_sf.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 11.
DR PANTHER; PTHR24015:SF339; DYW DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF01419; Jacalin; 3.
DR Pfam; PF01535; PPR; 5.
DR Pfam; PF13041; PPR_2; 4.
DR SMART; SM00915; Jacalin; 3.
DR SUPFAM; SSF51101; Mannose-binding lectins; 3.
DR SUPFAM; SSF48452; TPR-like; 1.
DR PROSITE; PS51752; JACALIN_LECTIN; 3.
DR PROSITE; PS51375; PPR; 10.
PE 3: Inferred from homology;
KW Lectin {ECO:0000256|ARBA:ARBA00022734};
KW Reference proteome {ECO:0000313|Proteomes:UP000032304};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 112..142
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 143..177
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 244..278
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 279..313
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 314..348
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 384..414
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 415..449
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 450..484
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 486..520
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 587..621
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 921..1061
FT /note="Jacalin-type lectin"
FT /evidence="ECO:0000259|PROSITE:PS51752"
FT DOMAIN 1156..1298
FT /note="Jacalin-type lectin"
FT /evidence="ECO:0000259|PROSITE:PS51752"
FT DOMAIN 1352..1495
FT /note="Jacalin-type lectin"
FT /evidence="ECO:0000259|PROSITE:PS51752"
FT REGION 1113..1145
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1116..1131
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1512 AA; 168202 MW; 9734BB8B9663D3AC CRC64;
MENLMITCIS KPPVIIPTKH DNLSEFSQPQ TKLSFTYTKN NKNPKITDNH VKYLARSGRL
AEAVAALDSI ALSGSQVRPN TFISLLQACI DFGSLDLGRK LHARIHLVKE SDPFVETKLV
SMYAKCGSFA DARKVFDEMI QKNLYTWSAM IGAYSRVSRW KEVVELFFLM MEDGVLPDEF
LFPRILQACA NCGDVRTGRL LHSLVIRLGM VCYTRVSNSV LAVYAKCGKL RSARRFFDYM
NERDRVTWNS MLLAYCQKGE NDEAYKLFNG MWGEGIEPCI VSWNILINSY NQLGRCDVAL
GLMKEMESSR VSPDVFTWTS MISGLAQNGR RWQALFLFKE MLLAGIKPNG VTITSAVSAC
ASLKVLKLGL EIHSIALRMG ITDNVLVGNS LIDMYAKCGE LEAARQVFDM IEEKDVYTWN
SMIAGYCQAG YCGKAYELFI KMQESDVKPN VITWNTMISG YIQNGDEDRA MDLFQRIEQD
GKIRRNTASW NALIAGYVQL GAIDKAFGVF RQMQSCSISP NSVTILSILP GCANLIATKK
VKEIHGCILR RDLEFVISIS NSLIDTYAKS GNILYSRNIF DGMSTRDIIS WNSIIGGYVL
HGCFDAALDL FDQMRKLGIK PNRGTFLSII LARGIAKMVD EGKQIFSSIS DNYEIIPAIE
HYSAMIDLYG RSGRLGEAME FIEDMPIEPD SSVWTSLLTA SRIHKDIALA VLAGERLLDL
EPGNIVVNQL MYQIYSLCGK LDDSSKVRKL EKESTLRRSL GHSWIEVRNT VHAFVTGDQS
KPSSNLLHSW VQNITREVNI DDHHGGFFIE EEKKEEIGGI HSEKLAIAFA LISSPSSPQS
IRIVKNIRMC RNCHLTAKGE ERIFKFREFM IYDSPPCPCT VSRNFASQYP DRQKGWNISW
QKIRALFIKT LLLSTEDDKK PVSVGPWGGQ GGTSWDDGVY CTIRQLVIAH GSGIDSVQIE
YDTKGNSLWS RKHGGNGGSK TDKVKLDFPD EFLTSIHGYY GSLNQRGPII VRSLTFHSNR
KAYGPFGIEQ GTSFSMNKGK IVGFRGRSGW YLDAIGVYSK PVLKLNPSKP IVHAQSVAAT
GPEKSGYSVI QGSVGESYDI VLAVRQRDGF VNPQPRELIR QNSSSSSSDD SSDVETKSKV
PFRTPMKVPP RLPEGVLTYG PWGGQGGTKF DDGTYTGIRQ IVLSRNVGIV SMKVCYDREG
QAVWGSKHGG TGGFKTERIM FDYPSEILTH ITGTFAPLMY MGPNVIRSLT FYTNKGKHGP
YGDEQGPSFT NKMNEGKIVG FLGREGLFLD AVGVHVMEGK VPPPKPSYSQ AIIQSERPIA
EIDNSPWSNK LVLARRGPVE EVACGVVKEP SPCGPGPWGG DGGRAWDDGV YSGIKQIFIT
KSEAICSIQI EYDRNGQSVW SPRHGGHGGT TTHRVKLDYP HEVLICISGY YGSINEEEKS
KVIRSLTFYT SRGKYGPFGE EVGTYFTSTT TQGKVVGFHG RCSSYLDAIG VHMQHWLGNQ
KASKMSLFKI FS
//
