ID A0A0D3A401_BRAOL Unreviewed; 1116 AA.
AC A0A0D3A401;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 46.
DE RecName: Full=Phytochrome {ECO:0000256|PIRNR:PIRNR000084};
GN Name=106305038 {ECO:0000313|EnsemblPlants:Bo1g019220.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo1g019220.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo1g019220.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo1g019220.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- FUNCTION: Regulatory photoreceptor which exists in two forms that are
CC reversibly interconvertible by light: the Pr form that absorbs
CC maximally in the red region of the spectrum and the Pfr form that
CC absorbs maximally in the far-red region.
CC {ECO:0000256|PIRNR:PIRNR000084}.
CC -!- PTM: Contains one covalently linked phytochromobilin chromophore.
CC {ECO:0000256|PIRSR:PIRSR000084-50}.
CC -!- SIMILARITY: Belongs to the phytochrome family.
CC {ECO:0000256|ARBA:ARBA00008235, ECO:0000256|PIRNR:PIRNR000084}.
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DR RefSeq; XP_013596874.1; XM_013741420.1.
DR AlphaFoldDB; A0A0D3A401; -.
DR STRING; 109376.A0A0D3A401; -.
DR EnsemblPlants; Bo1g019220.1; Bo1g019220.1; Bo1g019220.
DR GeneID; 106305038; -.
DR Gramene; Bo1g019220.1; Bo1g019220.1; Bo1g019220.
DR KEGG; boe:106305038; -.
DR eggNOG; ENOG502R3WG; Eukaryota.
DR HOGENOM; CLU_010418_0_0_1; -.
DR OMA; IMRESIQ; -.
DR OrthoDB; 1770905at2759; -.
DR Proteomes; UP000032141; Chromosome C1.
DR GO; GO:0043231; C:intracellular membrane-bounded organelle; IEA:UniProt.
DR GO; GO:0000155; F:phosphorelay sensor kinase activity; IEA:InterPro.
DR GO; GO:0009881; F:photoreceptor activity; IEA:UniProtKB-KW.
DR GO; GO:0042803; F:protein homodimerization activity; IEA:InterPro.
DR GO; GO:0009584; P:detection of visible light; IEA:InterPro.
DR GO; GO:0009585; P:red, far-red light phototransduction; IEA:InterPro.
DR GO; GO:0006355; P:regulation of DNA-templated transcription; IEA:InterPro.
DR CDD; cd16932; HATPase_Phy-like; 1.
DR CDD; cd00082; HisKA; 1.
DR CDD; cd00130; PAS; 2.
DR Gene3D; 1.10.287.130; -; 1.
DR Gene3D; 3.30.450.270; -; 1.
DR Gene3D; 3.30.450.40; -; 1.
DR Gene3D; 3.30.565.10; Histidine kinase-like ATPase, C-terminal domain; 1.
DR Gene3D; 3.30.450.20; PAS domain; 3.
DR InterPro; IPR003018; GAF.
DR InterPro; IPR029016; GAF-like_dom_sf.
DR InterPro; IPR003594; HATPase_C.
DR InterPro; IPR036890; HATPase_C_sf.
DR InterPro; IPR005467; His_kinase_dom.
DR InterPro; IPR003661; HisK_dim/P.
DR InterPro; IPR000014; PAS.
DR InterPro; IPR035965; PAS-like_dom_sf.
DR InterPro; IPR013654; PAS_2.
DR InterPro; IPR013767; PAS_fold.
DR InterPro; IPR044767; Phy_HATPase-like.
DR InterPro; IPR016132; Phyto_chromo_attachment.
DR InterPro; IPR013516; Phyto_chromo_BS.
DR InterPro; IPR001294; Phytochrome.
DR InterPro; IPR012129; Phytochrome_A-E.
DR InterPro; IPR013515; Phytochrome_cen-reg.
DR InterPro; IPR043150; Phytochrome_PHY_sf.
DR NCBIfam; TIGR00229; sensory_box; 1.
DR PANTHER; PTHR47876; OS08G0260000 PROTEIN; 1.
DR PANTHER; PTHR47876:SF3; PHYTOCHROME 1; 1.
DR Pfam; PF01590; GAF; 1.
DR Pfam; PF02518; HATPase_c; 1.
DR Pfam; PF00512; HisKA; 1.
DR Pfam; PF00989; PAS; 2.
DR Pfam; PF08446; PAS_2; 1.
DR Pfam; PF00360; PHY; 1.
DR PIRSF; PIRSF000084; Phytochrome; 1.
DR PRINTS; PR01033; PHYTOCHROME.
DR SMART; SM00065; GAF; 1.
DR SMART; SM00387; HATPase_c; 1.
DR SMART; SM00388; HisKA; 1.
DR SMART; SM00091; PAS; 2.
DR SUPFAM; SSF55874; ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase; 1.
DR SUPFAM; SSF55781; GAF domain-like; 2.
DR SUPFAM; SSF55785; PYP-like sensor domain (PAS domain); 3.
DR PROSITE; PS50109; HIS_KIN; 1.
DR PROSITE; PS50112; PAS; 2.
DR PROSITE; PS00245; PHYTOCHROME_1; 1.
DR PROSITE; PS50046; PHYTOCHROME_2; 1.
PE 3: Inferred from homology;
KW Chromophore {ECO:0000256|ARBA:ARBA00022991, ECO:0000256|PIRNR:PIRNR000084};
KW Photoreceptor protein {ECO:0000256|ARBA:ARBA00022543,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Receptor {ECO:0000256|ARBA:ARBA00023170, ECO:0000256|PIRNR:PIRNR000084};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Sensory transduction {ECO:0000256|ARBA:ARBA00022606,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Transcription {ECO:0000256|ARBA:ARBA00023163,
KW ECO:0000256|PIRNR:PIRNR000084};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015,
KW ECO:0000256|PIRNR:PIRNR000084}.
FT DOMAIN 218..378
FT /note="Phytochrome chromophore attachment site"
FT /evidence="ECO:0000259|PROSITE:PS50046"
FT DOMAIN 604..672
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 736..781
FT /note="PAS"
FT /evidence="ECO:0000259|PROSITE:PS50112"
FT DOMAIN 882..1101
FT /note="Histidine kinase"
FT /evidence="ECO:0000259|PROSITE:PS50109"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT BINDING 323
FT /ligand="phytochromobilin"
FT /ligand_id="ChEBI:CHEBI:189064"
FT /note="covalent"
FT /evidence="ECO:0000256|PIRSR:PIRSR000084-50"
SQ SEQUENCE 1116 AA; 122675 MW; C7A30409142F4A78 CRC64;
MGFESSSSAA SNMKQPRKSN TAQQYSVDAG LLADFDHSVN SGKSFNYSKS MISPPNNVPD
ERITAYLSNI QRGGLVQPFG CLIAVQEPSF RILGVSDNCI DFLGLSLAST SQPNELTVKG
LIGIDARSLF TPSSGASLAK AASFTEISLM NPVLVHSRTT TTAQKPFYAI LHRIDAGIVI
DLEPAKSSDP ALTLAGAVQS QKLAVRAISR LQSLPGGDIG ALCDTVVEDV QRLTGYDRVM
VYQFHEDDHG EVVSEIRRSD LEPYLGLHYP ATDIPQAARF LFKQNRVRMI CDCNATPVKV
VQSDELKRSL CLVNSTLRAP HSCHTQYMAN MGSIASLALA IVTKTKNSSK LWGLVVGHHC
SPRYVPFPLR YACEFLMQAF GLQLQMELQL ASQQAEKKAM KTQTLLCDML LRDTVSAIVT
QSPGIMDLVK CDGAALYYKG KCWLVGVTPS ESQVKDLVDW LVENHGDEST GLTTDSLVDA
GYPGAVSLGD KVCGMAAAGI SLKDYLIWFR SNTASAIKWG GAKHHPKDKD DAGRMHPRSS
FKAFLEVAKS RSLPWEASEI DAIHSLRVIM RESFTISTPV VLSSGNNNGV VGRDASELTS
FVCEMVRVIE TATAPIFGVD SNGCVNGWNN KTAEMTGLGA GEAMGKSLVD EIVQEESRGA
LESVLSKALR GEEKKNVMLK LRKFGNKDSS SSDVCVLVNS CTSRDYTEKI VGVCFVGQDM
TGEKAITDRF IRLQGDYKTI VQSLNPLIPP IFASDENARC SEWNAAMEKL TGWSKHEVIG
RMLPGEVFGD LCKVKCQDTL TKFLISLYQG IAGGGNVPES SLVGFFSKEG KYIEASLTAN
KSTNTEGKVI GCFFFLQIIN KESSSSSPEV KESAQSFNEL AYIRQEIKNP LNGIRFAHKL
LESSEISENQ RQFLETSNAC EKQIATIIED AALKSIEEGK LQLETEEFRL ESVLDTIISQ
VMIMLRERKS QLRVEVSQEI KTLPLYGDRV KLQLILADLL RNIVNHAPFP DSWVGIKISP
GHKLARDNDR YIHLQFRMIH PGKGLPSEML SDMFETREGW VTPDGLGLKL SRKLLEQMNG
RVSYVREDER CFFQVDLQVK TRLGVETIRT EAGSSI
//
