ID A0A0D3B5K2_BRAOL Unreviewed; 1301 AA.
AC A0A0D3B5K2;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 24-JAN-2024, entry version 30.
DE RecName: Full=glycerophosphodiester phosphodiesterase {ECO:0000256|ARBA:ARBA00012247};
DE EC=3.1.4.46 {ECO:0000256|ARBA:ARBA00012247};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo3g032280.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo3g032280.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo3g032280.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=a sn-glycero-3-phosphodiester + H2O = an alcohol + H(+) + sn-
CC glycerol 3-phosphate; Xref=Rhea:RHEA:12969, ChEBI:CHEBI:15377,
CC ChEBI:CHEBI:15378, ChEBI:CHEBI:30879, ChEBI:CHEBI:57597,
CC ChEBI:CHEBI:83408; EC=3.1.4.46;
CC Evidence={ECO:0000256|ARBA:ARBA00029315};
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DR STRING; 109376.A0A0D3B5K2; -.
DR EnsemblPlants; Bo3g032280.1; Bo3g032280.1; Bo3g032280.
DR Gramene; Bo3g032280.1; Bo3g032280.1; Bo3g032280.
DR eggNOG; KOG1187; Eukaryota.
DR eggNOG; KOG2258; Eukaryota.
DR HOGENOM; CLU_006333_0_0_1; -.
DR OMA; QRSINVP; -.
DR Proteomes; UP000032141; Chromosome C3.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-UniRule.
DR GO; GO:0008889; F:glycerophosphodiester phosphodiesterase activity; IEA:UniProtKB-EC.
DR GO; GO:0004674; F:protein serine/threonine kinase activity; IEA:UniProtKB-KW.
DR GO; GO:0006071; P:glycerol metabolic process; IEA:UniProtKB-KW.
DR GO; GO:0006629; P:lipid metabolic process; IEA:InterPro.
DR GO; GO:0016310; P:phosphorylation; IEA:UniProtKB-KW.
DR CDD; cd08603; GDPD_SHV3_repeat_1; 1.
DR CDD; cd08604; GDPD_SHV3_repeat_2; 1.
DR CDD; cd14066; STKc_IRAK; 1.
DR Gene3D; 3.20.20.190; Phosphatidylinositol (PI) phosphodiesterase; 2.
DR Gene3D; 1.10.510.10; Transferase(Phosphotransferase) domain 1; 1.
DR InterPro; IPR000742; EGF-like_dom.
DR InterPro; IPR030395; GP_PDE_dom.
DR InterPro; IPR011009; Kinase-like_dom_sf.
DR InterPro; IPR017946; PLC-like_Pdiesterase_TIM-brl.
DR InterPro; IPR000719; Prot_kinase_dom.
DR InterPro; IPR017441; Protein_kinase_ATP_BS.
DR InterPro; IPR001245; Ser-Thr/Tyr_kinase_cat_dom.
DR InterPro; IPR008271; Ser/Thr_kinase_AS.
DR InterPro; IPR032872; WAK_assoc_C.
DR PANTHER; PTHR43620:SF39; GLYCEROPHOSPHODIESTER PHOSPHODIESTERASE; 1.
DR PANTHER; PTHR43620; GLYCEROPHOSPHORYL DIESTER PHOSPHODIESTERASE; 1.
DR Pfam; PF03009; GDPD; 1.
DR Pfam; PF07714; PK_Tyr_Ser-Thr; 1.
DR Pfam; PF14380; WAK_assoc; 1.
DR SMART; SM00220; S_TKc; 1.
DR SUPFAM; SSF51695; PLC-like phosphodiesterases; 2.
DR SUPFAM; SSF56112; Protein kinase-like (PK-like); 1.
DR PROSITE; PS00022; EGF_1; 1.
DR PROSITE; PS51704; GP_PDE; 2.
DR PROSITE; PS00107; PROTEIN_KINASE_ATP; 1.
DR PROSITE; PS50011; PROTEIN_KINASE_DOM; 1.
DR PROSITE; PS00108; PROTEIN_KINASE_ST; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840, ECO:0000256|PROSITE-
KW ProRule:PRU10141}; Glycerol metabolism {ECO:0000256|ARBA:ARBA00022798};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Kinase {ECO:0000256|ARBA:ARBA00022777}; Membrane {ECO:0000256|SAM:Phobius};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741, ECO:0000256|PROSITE-
KW ProRule:PRU10141}; Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Serine/threonine-protein kinase {ECO:0000256|ARBA:ARBA00022527};
KW Signal {ECO:0000256|ARBA:ARBA00022729};
KW Transferase {ECO:0000256|ARBA:ARBA00022679};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius}.
FT TRANSMEM 937..958
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 77..376
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
FT DOMAIN 379..681
FT /note="GP-PDE"
FT /evidence="ECO:0000259|PROSITE:PS51704"
FT DOMAIN 989..1278
FT /note="Protein kinase"
FT /evidence="ECO:0000259|PROSITE:PS50011"
FT BINDING 1017
FT /ligand="ATP"
FT /ligand_id="ChEBI:CHEBI:30616"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU10141"
SQ SEQUENCE 1301 AA; 144280 MW; 3ADB2CBFBE42C512 CRC64;
MDPGRLPMLL WQRAGTDLLG LRMEETPTNF KGGNPTRGGL RAWMFLLCGV VLIQLFAGQT
DAQRSRGPWQ TLSGDAPLVI ARGGFSGLFP DSSLKAYSFV KQTSVAGAAL WCDVQLTKDG
AGICFPDLKL NNASTIDFVY PNRKKSYLVN GVPTQGWFTI EFSLRELSNV TLNRGILFRS
EKFDGIYPIS TVGDVTTQIK PESFWLNVQH DAFYAQQNLS MSSFLISASR NVSIDYVSSP
EVNFFKKIAG DFGPNGPSFV FQFLGKEEFE PTTNRTYGSI LSNLTFVKTF ASGILVPKSY
ILPLDDKQYL LPPTSLVQDA HKAGLQVYVS GFANDIDIAH DYSFDPVTEY LSFVDNGNFS
VDGVLSDFPI TASSSIVDFL VISKNGASGD YPGCTDMAYD KAIKDGADVI DCSVQMSSDG
IPFCSRSIDL SNSTVISHTP YAQRSINVPE ISSNGGIYTF SLTWAEIQSL TPAISNPYRL
YSMFRNPDET NSGKLILLSE FLNLAKNSTS LSGVLISVEN AVYLREKQGL DVVKAVLDTL
METGYSNGIT TEKVMIQSTE SSVLVDFKEQ SKYDTVYKIE KNISDISDAA IQAIKKFANA
VVIRKETVFS LFDSFITTQT NVVKKLQKSW LPVYVELFQN EFVSQPYDFF ADPTVEINSY
ITGAGISGTI IEFPFTAARY KRNRCLGTKE PLPPYMSPVL PGGLLPFLNA KPPAQAPNPV
FTEEDVSAYD LYKRCSQPFP NFNLNCSGGF AEITVSSVKF RILKANYTSR IIKLARSDYI
DTLCPSDPLN EPFYQSDLQL VNDTDMITML YDCQDLSALI YSSEAYNYVT DFQCNDQKEG
LNNYCVVINS SSSLFNGRVG SKLHTLDSDN LKKTLEQGFE VELKQDCSMC LDSKGASCGY
NQTSGKFVCY CDDGTHGPNC SSGKRSHESL VNAVRKVSGS IAGVVMFFVL LSLFLLFLRK
RQVRQRQQNM KSLIPLRQYT YAQVKRITKS FAEVVGRGGF GIVYRGTLSD GRMVAVKVLK
DSKGNGEDFT NEVASMSQTS HLNIVTLLGF CSEGSKRAII YEFLGNGSLD KFISGNTSMN
LDWTSLYQIA LGVARGLEYL HHGCKTRIVH FDIKPQNVLL DENFCPKVSD FGLAKLCEKK
ESALSLLDTR GTVGYIAPEM ISRVYGSVSH KSDVYSYGML VLEMIGARNK ERAHQDSTSN
TSSIYFPEWV YRDIELGKSR RLIENEISNE EHELAKKMTL VGLWCIQSSP SERPPMNRVV
EMMEGSLDAL EVPPRPVLQI PIAPLQESST LSRDMSVYTE E
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