ID A0A0D3BS86_BRAOL Unreviewed; 348 AA.
AC A0A0D3BS86;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 39.
DE RecName: Full=WD repeat-containing protein 55 {ECO:0000256|PIRNR:PIRNR038169};
GN Name=106339460 {ECO:0000313|EnsemblPlants:Bo4g040060.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo4g040060.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo4g040060.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo4g040060.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|PIRNR:PIRNR038169}.
CC -!- SIMILARITY: Belongs to the WD repeat WDR55 family.
CC {ECO:0000256|PIRNR:PIRNR038169}.
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DR RefSeq; XP_013633732.1; XM_013778278.1.
DR AlphaFoldDB; A0A0D3BS86; -.
DR STRING; 109376.A0A0D3BS86; -.
DR EnsemblPlants; Bo4g040060.1; Bo4g040060.1; Bo4g040060.
DR GeneID; 106339460; -.
DR Gramene; Bo4g040060.1; Bo4g040060.1; Bo4g040060.
DR KEGG; boe:106339460; -.
DR eggNOG; KOG2444; Eukaryota.
DR HOGENOM; CLU_035848_2_0_1; -.
DR OMA; MFENLCT; -.
DR OrthoDB; 153323at2759; -.
DR Proteomes; UP000032141; Chromosome C4.
DR GO; GO:0005737; C:cytoplasm; IEA:EnsemblPlants.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR GO; GO:0009855; P:determination of bilateral symmetry; IEA:EnsemblPlants.
DR GO; GO:0080186; P:developmental vegetative growth; IEA:EnsemblPlants.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR GO; GO:0009960; P:endosperm development; IEA:EnsemblPlants.
DR GO; GO:0010197; P:polar nucleus fusion; IEA:EnsemblPlants.
DR Gene3D; 2.130.10.10; YVTN repeat-like/Quinoprotein amine dehydrogenase; 2.
DR InterPro; IPR015943; WD40/YVTN_repeat-like_dom_sf.
DR InterPro; IPR019775; WD40_repeat_CS.
DR InterPro; IPR036322; WD40_repeat_dom_sf.
DR InterPro; IPR001680; WD40_rpt.
DR InterPro; IPR017422; WDR55.
DR PANTHER; PTHR44019; WD REPEAT-CONTAINING PROTEIN 55; 1.
DR PANTHER; PTHR44019:SF20; WD REPEAT-CONTAINING PROTEIN 55; 1.
DR Pfam; PF00400; WD40; 4.
DR PIRSF; PIRSF038169; WD_repeat_p55; 1.
DR SMART; SM00320; WD40; 5.
DR SUPFAM; SSF50978; WD40 repeat-like; 1.
DR PROSITE; PS00678; WD_REPEATS_1; 1.
DR PROSITE; PS50082; WD_REPEATS_2; 2.
DR PROSITE; PS50294; WD_REPEATS_REGION; 1.
PE 3: Inferred from homology;
KW Developmental protein {ECO:0000256|PIRNR:PIRNR038169};
KW Nucleus {ECO:0000256|PIRNR:PIRNR038169};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW WD repeat {ECO:0000256|ARBA:ARBA00022574, ECO:0000256|PIRNR:PIRNR038169}.
FT REPEAT 90..130
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REPEAT 258..292
FT /note="WD"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00221"
FT REGION 299..348
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 316..337
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 348 AA; 38145 MW; 3182B42D4F44EDD9 CRC64;
MEIDLGANAF GIDFHPSKKL VAAGLIDGQL HLYRYDTESS LVRERKVRAH KESCRAVRFI
DDGQRIVTAS ADCSILATDV ETGASVLRLE NAHEDAVNTL ITVTETTIAS GDDKGCVKIW
DTRQRSCSHE FNVHEDYISD MTFASDTMKL VATSGDGTLS VCNLRTSKVQ AQSEFSEDEL
LSVVIMKNGR KAICGTQNGI LMLYSWGFFK DCSDRFVDLS PNSVDVLLKL DEDRLITGCD
NGIISLVGIL PNRIIQPIGS HEFPIEDLAL SHDNKFLGST AHDSMLKLWD LEEIIEGSNG
NASGAAEDSD SDNDGMDLDN DPKPSKGSKR KTKSKANPVD NRAFFADM
//
