ID A0A0D3CA72_BRAOL Unreviewed; 780 AA.
AC A0A0D3CA72;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 41.
DE RecName: Full=Splicing factor 3A subunit 1 {ECO:0008006|Google:ProtNLM};
GN Name=106295191 {ECO:0000313|EnsemblPlants:Bo5g019860.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g019860.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo5g019860.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo5g019860.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
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DR RefSeq; XP_013586480.1; XM_013731026.1.
DR AlphaFoldDB; A0A0D3CA72; -.
DR STRING; 109376.A0A0D3CA72; -.
DR EnsemblPlants; Bo5g019860.1; Bo5g019860.1; Bo5g019860.
DR GeneID; 106295191; -.
DR Gramene; Bo5g019860.1; Bo5g019860.1; Bo5g019860.
DR KEGG; boe:106295191; -.
DR eggNOG; KOG0007; Eukaryota.
DR HOGENOM; CLU_013259_1_0_1; -.
DR OMA; HAYYRHR; -.
DR OrthoDB; 168687at2759; -.
DR Proteomes; UP000032141; Chromosome C5.
DR GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0045292; P:mRNA cis splicing, via spliceosome; IEA:InterPro.
DR CDD; cd01800; Ubl_SF3a120; 1.
DR Gene3D; 1.10.10.790; Surp module; 2.
DR InterPro; IPR045146; SF3A1.
DR InterPro; IPR022030; SF3A1_dom.
DR InterPro; IPR035563; SF3As1_ubi.
DR InterPro; IPR000061; Surp.
DR InterPro; IPR035967; SWAP/Surp_sf.
DR InterPro; IPR000626; Ubiquitin-like_dom.
DR InterPro; IPR029071; Ubiquitin-like_domsf.
DR PANTHER; PTHR15316; SPLICEOSOME ASSOCIATED PROTEIN 114/SWAP SPLICING FACTOR-RELATED; 1.
DR PANTHER; PTHR15316:SF1; SPLICING FACTOR 3A SUBUNIT 1; 1.
DR Pfam; PF12230; PRP21_like_P; 1.
DR Pfam; PF01805; Surp; 2.
DR Pfam; PF00240; ubiquitin; 1.
DR SMART; SM00648; SWAP; 2.
DR SMART; SM00213; UBQ; 1.
DR SUPFAM; SSF109905; Surp module (SWAP domain); 2.
DR SUPFAM; SSF54236; Ubiquitin-like; 1.
DR PROSITE; PS50128; SURP; 2.
DR PROSITE; PS50053; UBIQUITIN_2; 1.
PE 4: Predicted;
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Spliceosome {ECO:0000256|ARBA:ARBA00022728}.
FT DOMAIN 67..109
FT /note="SURP motif"
FT /evidence="ECO:0000259|PROSITE:PS50128"
FT DOMAIN 189..231
FT /note="SURP motif"
FT /evidence="ECO:0000259|PROSITE:PS50128"
FT DOMAIN 721..777
FT /note="Ubiquitin-like"
FT /evidence="ECO:0000259|PROSITE:PS50053"
FT REGION 1..61
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 121..151
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 627..678
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 644..665
FT /note="Pro residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 780 AA; 86608 MW; 400E9FE288456028 CRC64;
MFSSSQILPL EAPPTDGNLG PLPPSQLTDQ EAEEKELQSS SNQAPESVAT HTRTIGIIHP
PPDIRSIVEK TAQFVSKNGL EFEKRIIASN AKNAKFNFLT SSDPYHAFYQ HKLAEYRAQN
QDGAQGDDTD GPDGASLQLD GGDGDGEAGE AQADLQAQFR VPPKPLEPPE PEKYTVRLPE
GITGEELEYI KLTAQFVARN GKSFLTGLQS RESNNPQFHF MKPTHSLFSF FTALVDAYFD
VLKPPEDLKE KLRKSATDLT TVLERCLHRL EWDRSQEQQR KKEEDEKEQE RVQMAMIDWH
DFVVVESIDF ADEEDDELPP PMTLEEVIRR SKVSSAMEED EVVEPGKEVE MEMDEEEVRL
VAEGMRAANL EANGGSVKIE TLNDEEAPMR IVKNWKRPED RIPTERDPTK VVISPITGEL
IPISEMSEHM RISLIDPKFK EQKDRMFAKI RETTLAQDDE IAKNIVGLAR LRPDIFGTTE
EEVSNAVKAE IEKKKDEQPS QVIWDGHTGS IGRTANQALA QNANGEEQYG DPNSFPGPAA
LPPPRPGVPI VRPLPPPPNL ALNVPRPPPS VQYPGPPRPL GVPMVQPMHP QHQLSMPGPP
GHQPMMMNRP PQMQHGMPVP PPPGSQFAHL QVPRPYGQLP PTMHGMMQPP PMHGMPPPPP
HEEAPPPLPE EPEPKRQKFD ESALVPEEQF LAQHPGSATI RVSVPNVDIG QVIEITVQSL
SENVGSLKEK IAGETQIPAN KQKLSGKAGF LKDNMSLAHY NVGAGEILTL SLRERGGRKR
//
