ID A0A0D3CDW6_BRAOL Unreviewed; 760 AA.
AC A0A0D3CDW6;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 35.
DE RecName: Full=DYW domain-containing protein {ECO:0000259|Pfam:PF14432};
GN Name=106343400 {ECO:0000313|EnsemblPlants:Bo5g050620.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo5g050620.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo5g050620.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo5g050620.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
CC -!- SIMILARITY: Belongs to the PPR family. PCMP-H subfamily.
CC {ECO:0000256|ARBA:ARBA00006643}.
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DR RefSeq; XP_013638050.1; XM_013782596.1.
DR AlphaFoldDB; A0A0D3CDW6; -.
DR EnsemblPlants; Bo5g050620.1; Bo5g050620.1; Bo5g050620.
DR GeneID; 106343400; -.
DR Gramene; Bo5g050620.1; Bo5g050620.1; Bo5g050620.
DR KEGG; boe:106343400; -.
DR eggNOG; KOG4197; Eukaryota.
DR HOGENOM; CLU_002706_37_2_1; -.
DR OMA; SCVWGAL; -.
DR OrthoDB; 340767at2759; -.
DR Proteomes; UP000032141; Chromosome C5.
DR GO; GO:0003723; F:RNA binding; IEA:InterPro.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009451; P:RNA modification; IEA:InterPro.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 4.
DR InterPro; IPR032867; DYW_dom.
DR InterPro; IPR046848; E_motif.
DR InterPro; IPR046849; Eplus_motif.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR045215; PPR_prot_At1g15510.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR NCBIfam; TIGR00756; PPR; 8.
DR PANTHER; PTHR24015:SF739; OS03G0644200 PROTEIN; 1.
DR PANTHER; PTHR24015; OS07G0578800 PROTEIN-RELATED; 1.
DR Pfam; PF14432; DYW_deaminase; 1.
DR Pfam; PF20431; E_motif; 1.
DR Pfam; PF20430; Eplus_motif; 1.
DR Pfam; PF01535; PPR; 4.
DR Pfam; PF13041; PPR_2; 3.
DR PROSITE; PS51375; PPR; 6.
PE 3: Inferred from homology;
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Repeat {ECO:0000256|ARBA:ARBA00022737}.
FT REPEAT 80..114
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 181..215
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 216..250
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 352..386
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 453..487
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT REPEAT 488..523
FT /note="PPR"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
FT DOMAIN 668..760
FT /note="DYW"
FT /evidence="ECO:0000259|Pfam:PF14432"
SQ SEQUENCE 760 AA; 84391 MW; EACCC8D52CFF3B35 CRC64;
MTKQVLPLIE KIPQTILGFL ESSPSCWSSS LSKTTQAHAR ILKSGAQNDG YISAKLIASY
SNYSCFDDAN LILQSIPDPN VYTFSSLIYA LTKAKLYSQS LGVFSRMFSR GLIPDTHVLP
NLFKVCAELS AFRAGKQIHC VACALGLDGD GFVQGSLFHM YMRCGKMGDA RKMFDRMCNR
DVVTCSALLC GYARKGCLEE VVRVLSEMES SGIEPNIVSW NGILSGFNRS GYHKEAVVMF
QKMHHLGFLP DEIAVSSVLP SVGDSERLDI GRQIHGYAIK QGLLKDKCVI SAMIDMYGKS
GHVYGIIELF EQFELMETGV CNACITGLSR NGLVDKALEM FALFKEQKME LNVVSWTSII
AGCAQNGKDI ETLELFREMQ VAGVKPNRVT IPSMLPACGN IAALVHGRSA HGFAVRVHLL
DDVHVGSALI DMYAKCGRIN MSQVVFDMMP TRNLVCWNSL MSGYSMHGKA KEVMSIFESL
VRTRLKPDFI SFTSLLSACS QVGLTDEGWK YFGMMTEEYG IKPRLEHYSC MVSLLGRAGK
LQEAYDLVKE MPLEPDSCVW GALLNSCRLQ NNVDLAEIAA EKLFGLEPEN PGSYVLLSNI
YAAKGMWAEV DSIRNKMESL GLEKNPGCSW IQVKNKVYTL LAGDKSHPQI DQITEKMDEI
SKEMRRAGHL PNLDFALQDV EEQEQEQALW GHSEKLAVVF GLLNTPDGTP LQVIKNLRIC
GDCHSVIKFI SGYAGREIFV RDTNRFHHFK DGVCSCGDFW
//
