ID A0A0D3CW98_BRAOL Unreviewed; 1084 AA.
AC A0A0D3CW98;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 40.
DE RecName: Full=FYVE-type domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=106300317 {ECO:0000313|EnsemblPlants:Bo6g083630.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g083630.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo6g083630.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo6g083630.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
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DR RefSeq; XP_013591884.1; XM_013736430.1.
DR AlphaFoldDB; A0A0D3CW98; -.
DR STRING; 109376.A0A0D3CW98; -.
DR EnsemblPlants; Bo6g083630.1; Bo6g083630.1; Bo6g083630.
DR GeneID; 106300317; -.
DR Gramene; Bo6g083630.1; Bo6g083630.1; Bo6g083630.
DR KEGG; boe:106300317; -.
DR eggNOG; ENOG502QT6C; Eukaryota.
DR HOGENOM; CLU_005343_0_0_1; -.
DR OMA; ACNVDFV; -.
DR OrthoDB; 551430at2759; -.
DR Proteomes; UP000032141; Chromosome C6.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR CDD; cd00065; FYVE_like_SF; 1.
DR CDD; cd13365; PH_PLC_plant-like; 1.
DR Gene3D; 2.30.29.30; Pleckstrin-homology domain (PH domain)/Phosphotyrosine-binding domain (PTB); 1.
DR Gene3D; 2.130.10.30; Regulator of chromosome condensation 1/beta-lactamase-inhibitor protein II; 2.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR013591; Brevis_radix_dom.
DR InterPro; IPR027988; BRX_N.
DR InterPro; IPR011993; PH-like_dom_sf.
DR InterPro; IPR001849; PH_domain.
DR InterPro; IPR009091; RCC1/BLIP-II.
DR InterPro; IPR000408; Reg_chr_condens.
DR InterPro; IPR000306; Znf_FYVE.
DR InterPro; IPR017455; Znf_FYVE-rel.
DR InterPro; IPR011011; Znf_FYVE_PHD.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR22870:SF379; PH, RCC1 AND FYVE DOMAINS-CONTAINING PROTEIN 1; 1.
DR PANTHER; PTHR22870; REGULATOR OF CHROMOSOME CONDENSATION; 1.
DR Pfam; PF08381; BRX; 1.
DR Pfam; PF13713; BRX_N; 1.
DR Pfam; PF01363; FYVE; 1.
DR Pfam; PF16457; PH_12; 1.
DR Pfam; PF00415; RCC1; 6.
DR PRINTS; PR00633; RCCNDNSATION.
DR SMART; SM00064; FYVE; 1.
DR SUPFAM; SSF57903; FYVE/PHD zinc finger; 1.
DR SUPFAM; SSF50729; PH domain-like; 1.
DR SUPFAM; SSF50985; RCC1/BLIP-II; 1.
DR PROSITE; PS51514; BRX; 1.
DR PROSITE; PS00626; RCC1_2; 3.
DR PROSITE; PS50012; RCC1_3; 7.
DR PROSITE; PS50178; ZF_FYVE; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00091}.
FT REPEAT 232..293
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 294..343
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 344..398
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 399..450
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 463..514
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 515..566
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT REPEAT 567..618
FT /note="RCC1"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00235"
FT DOMAIN 623..685
FT /note="FYVE-type"
FT /evidence="ECO:0000259|PROSITE:PS50178"
FT DOMAIN 1008..1063
FT /note="BRX"
FT /evidence="ECO:0000259|PROSITE:PS51514"
FT REGION 145..189
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 771..806
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 946..977
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 817..893
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 145..173
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1084 AA; 118146 MW; F486F94962A86CA8 CRC64;
MADLVSYSNA ADHNLEQALN TLKKGTQLLK YGRKGKPKFY PFRLSSDEKS LIWISSSGEK
RLKLASVSKI VPGQRTAVFQ RYLRPEKDYL SFSLLYNGKK KSLDLICKDK VEAEVWIGGL
KTLISGGQGG RSKIDGWSGG NISVDASRDV TSSSQSSSSA SASQGHSSPG TPFNFDPVPS
PKSTEPEKSH VALDTKMMQT KVSGSDGFRV SVSSAQSSSS HGSGADDSDA LGDVYIWGEV
ICDNVVKVGI DKNASYLTTR TDVLVPKPLE SNIVLDVHQI ACGVRHAAFV TRQGEVFTWG
EESGGRLGHG IGKDVFHPRL VESLTACDFV ACGEFHTCAV TLSGELYTWG DGTHNVGLLG
HGSDVSHWIP KRIAGPLEGL HVASVTCGPW HTALVTSHGR LFTFGDGTFG VLGHGDKETV
QYPREVESLS GLRTIAVSCG VWHTAAVVEI IVTQSNSSSV SSGKLFTWGD GDKNRLGHGD
KDPRLKPTCV PVLIDYNFHK IACGHSLTVG LTTSGQVFTM GSTVYGQLGN VQTDGKLPCL
VEDKLASEFV EEISCGAYHV AALTSRNEVY TWGKGANGRL GHGDLEDRKV PTLVEALKDR
HVKYVACGSN YTAAICLHKW VSGAEQSQCS SCRLAFGFTR KRHNCYNCGL VHCHSCSSKK
AFRAALAPSA GRLYRVCDSC YVKLSKVSEI SETTSRRNSV VPRLSGENKD RLDKSEIRLA
KFGASNMDLI KQLDSKAAKQ GKKSDNFALG RNSQLPSLMQ LKDAVQSNIG RSTPKLVQAP
SGINSRSVSP FSRRSSPPRS ATPMPSTSGI YFPVGVADNM KKTNEILNQE IIKLRTQVDS
LTQKCELQEV ELKNSVKKTQ EALALAEEES AKSRAAKEAI KSLIAQLKDV AEKLPPGESI
KLGLDQNGFH FPEENGFHSS RSESMTSSIS SVAPFDFAFA NSSWSNLQSP KHTPRAGERN
NNNNTAYPLD PRLSSSGSVI SERHEPFQFH NNGSSQAGAD NNTDQVEAEW IEQYEPGVYI
TLVALHDGTR DLRRVRFSRR RFGEHQAETW WSESREKVYE KYNVRVSEKP TASQTDRDEE
DVTQ
//
