ID A0A0D3D0H8_BRAOL Unreviewed; 467 AA.
AC A0A0D3D0H8;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 33.
DE RecName: Full=RING-type domain-containing protein {ECO:0000259|PROSITE:PS50089};
GN Name=106296873 {ECO:0000313|EnsemblPlants:Bo6g118230.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo6g118230.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo6g118230.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo6g118230.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
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DR RefSeq; XP_013588566.1; XM_013733112.1.
DR AlphaFoldDB; A0A0D3D0H8; -.
DR STRING; 109376.A0A0D3D0H8; -.
DR EnsemblPlants; Bo6g118230.1; Bo6g118230.1; Bo6g118230.
DR GeneID; 106296873; -.
DR Gramene; Bo6g118230.1; Bo6g118230.1; Bo6g118230.
DR KEGG; boe:106296873; -.
DR eggNOG; KOG1100; Eukaryota.
DR HOGENOM; CLU_031159_0_0_1; -.
DR OMA; DAIWEML; -.
DR OrthoDB; 451199at2759; -.
DR Proteomes; UP000032141; Chromosome C6.
DR GO; GO:0016020; C:membrane; IEA:UniProtKB-KW.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR019396; TM_Fragile-X-F-assoc.
DR InterPro; IPR001841; Znf_RING.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR46859; TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN; 1.
DR PANTHER; PTHR46859:SF11; TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN; 1.
DR Pfam; PF10269; Tmemb_185A; 1.
DR Pfam; PF13920; zf-C3HC4_3; 1.
DR SMART; SM00184; RING; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR PROSITE; PS50089; ZF_RING_2; 1.
PE 4: Predicted;
KW Membrane {ECO:0000256|SAM:Phobius};
KW Metal-binding {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141};
KW Transmembrane {ECO:0000256|SAM:Phobius};
KW Transmembrane helix {ECO:0000256|SAM:Phobius};
KW Zinc {ECO:0000256|PROSITE-ProRule:PRU00175};
KW Zinc-finger {ECO:0000256|PROSITE-ProRule:PRU00175}.
FT TRANSMEM 12..30
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 36..52
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 73..94
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 100..122
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 143..166
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT TRANSMEM 178..198
FT /note="Helical"
FT /evidence="ECO:0000256|SAM:Phobius"
FT DOMAIN 420..455
FT /note="RING-type"
FT /evidence="ECO:0000259|PROSITE:PS50089"
SQ SEQUENCE 467 AA; 53015 MW; A38CAF58DB4795F9 CRC64;
MNCRRMLKSV QALSAHSFLF CFTLVLVLKL DHTVSHSWWV VCLPLWAFHA VVSRGRFSLP
APIAPRNRHW APCHAIVATP LLVAFELLLC VYLESAHARW PPAVSLKIVF LPLLAFEVTI
LVDNARMCRA LMPGDEESIN DEAIWEALPY FWVAISMVFF LAATVFTLLK LSGDVAALGW
WDLFINFGIA ECFAFLVCTK WSNPVIHRGS PVREPGSSYT TTRYVVSNRG LSDFSEDDMH
QDGTCGLQDI GGHIMKIPLI IFQVVLCMHL EGTPEAAKYI PVPVLFSPLF LLQGVGILFA
GSKLVEKFVL LLRGDDDTGL YFRISSRAHD CLGFLHHGSR LLGWWSIDEG SQEEQARIYF
DQESGYSTFC GHPPEIVKKM PKKDLAEEVW RLQAALGEQT EITKFSQQEY ERLQNEKVLC
RVCFEREISV VLLPCRHRVL CRNCSEKCKK CPFCRVTIEE RLPVYDV
//
