ID A0A0D3D2G5_BRAOL Unreviewed; 578 AA.
AC A0A0D3D2G5;
DT 29-APR-2015, integrated into UniProtKB/TrEMBL.
DT 29-APR-2015, sequence version 1.
DT 27-MAR-2024, entry version 38.
DE RecName: Full=Factor of DNA methylation 1-5/IDN2 domain-containing protein {ECO:0008006|Google:ProtNLM};
GN Name=106302312 {ECO:0000313|EnsemblPlants:Bo7g005210.1};
OS Brassica oleracea var. oleracea.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo7g005210.1, ECO:0000313|Proteomes:UP000032141};
RN [1] {ECO:0000313|EnsemblPlants:Bo7g005210.1, ECO:0000313|Proteomes:UP000032141}
RP NUCLEOTIDE SEQUENCE.
RC STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA Chalhoub B., Sharpe A.G.;
RT "Transcriptome and methylome profiling reveals relics of genome dominance
RT in the mesopolyploid Brassica oleracea.";
RL Genome Biol. 15:R77-R77(2014).
RN [2] {ECO:0000313|EnsemblPlants:Bo7g005210.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (MAR-2015) to UniProtKB.
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DR RefSeq; XP_013594305.1; XM_013738851.1.
DR AlphaFoldDB; A0A0D3D2G5; -.
DR STRING; 109376.A0A0D3D2G5; -.
DR EnsemblPlants; Bo7g005210.1; Bo7g005210.1; Bo7g005210.
DR GeneID; 106302312; -.
DR Gramene; Bo7g005210.1; Bo7g005210.1; Bo7g005210.
DR KEGG; boe:106302312; -.
DR eggNOG; ENOG502QRE8; Eukaryota.
DR HOGENOM; CLU_021775_1_1_1; -.
DR OMA; FPNQEAE; -.
DR OrthoDB; 1112799at2759; -.
DR Proteomes; UP000032141; Chromosome C7.
DR GO; GO:0080188; P:gene silencing by RNA-directed DNA methylation; IEA:InterPro.
DR Gene3D; 3.30.70.2890; XS domain; 1.
DR InterPro; IPR045177; FDM1-5/IDN2.
DR InterPro; IPR005379; FDM1-5/IDN2_XH.
DR InterPro; IPR005380; XS_domain.
DR InterPro; IPR038588; XS_domain_sf.
DR PANTHER; PTHR21596:SF53; FACTOR OF DNA METHYLATION 5; 1.
DR PANTHER; PTHR21596; RIBONUCLEASE P SUBUNIT P38; 1.
DR Pfam; PF03469; XH; 1.
DR Pfam; PF03468; XS; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Reference proteome {ECO:0000313|Proteomes:UP000032141}.
FT DOMAIN 99..206
FT /note="XS"
FT /evidence="ECO:0000259|Pfam:PF03468"
FT DOMAIN 452..570
FT /note="Factor of DNA methylation 1-5/IDN2"
FT /evidence="ECO:0000259|Pfam:PF03469"
FT REGION 1..22
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 352..433
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 463..514
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 578 AA; 68264 MW; 0180E882F281C129 CRC64;
MDNSSCESEE SDYSEKPYKQ LRDGELKVKQ KEETFKCPFC PEKKKQRYKE LLVAKSTTRN
CKQKANHLAL SKYLHNELAG DAEPVISLSK QKQAAVVNDD MYVWPWMGIV ISPLRGNDDD
KSFLLLDSAY WLRKLARFNP LEVKTLWVEE DSAVAVIPRF NGGMDGFKSA TELEKEFDVK
RCGREDWRRF KFKTYGWCAR ADDYNSQGSI AEYLSTVGRL RSFSDISKEE MQKSDNVAYD
LDDKIYMMNE DYNEVQFKYK EETISLQRLL MEKHTLDQTY KQETKRMQEF SQRNIDRILR
EKEMLNKKLE YRMKGLDAWS KELDKKQALT ELERLTLEEE ERCCELLSPR KKEEALNKIL
QLEKELNSKQ QLQMEIQELK GKLQVMKHHR EDEDDEDVKK KMKEMNEDLE DTNSALMIKE
RQSNDEIQEA RQELITGLIG MLSGDRTNIR IKRLGELDEK PFLKACKERF KGEEAEVQSL
KDSGWYPFKH VGTEDKMKEV VDEEDEQLKK LREEWGAQVL EAVKTALEEL NEYNPSGRYS
VPALWNFKEK RKATLKEVIE YMTLQIKNLK SLKRKRKD
//
