ID   A0A0D3E9J4_BRAOL        Unreviewed;       424 AA.
AC   A0A0D3E9J4;
DT   29-APR-2015, integrated into UniProtKB/TrEMBL.
DT   29-APR-2015, sequence version 1.
DT   27-MAR-2024, entry version 27.
DE   RecName: Full=Reverse transcriptase zinc-binding domain-containing protein {ECO:0008006|Google:ProtNLM};
OS   Brassica oleracea var. oleracea.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae;
OC   rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica.
OX   NCBI_TaxID=109376 {ECO:0000313|EnsemblPlants:Bo9g095430.1, ECO:0000313|Proteomes:UP000032141};
RN   [1] {ECO:0000313|EnsemblPlants:Bo9g095430.1, ECO:0000313|Proteomes:UP000032141}
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=cv. TO1000 {ECO:0000313|Proteomes:UP000032141};
RX   PubMed=24916971; DOI=10.1186/gb-2014-15-6-r77;
RA   Parkin I.A., Koh C., Tang H., Robinson S.J., Kagale S., Clarke W.E.,
RA   Town C.D., Nixon J., Krishnakumar V., Bidwell S.L., Denoeud F., Belcram H.,
RA   Links M.G., Just J., Clarke C., Bender T., Huebert T., Mason A.S.,
RA   Pires J.C., Barker G., Moore J., Walley P.G., Manoli S., Batley J.,
RA   Edwards D., Nelson M.N., Wang X., Paterson A.H., King G., Bancroft I.,
RA   Chalhoub B., Sharpe A.G.;
RT   "Transcriptome and methylome profiling reveals relics of genome dominance
RT   in the mesopolyploid Brassica oleracea.";
RL   Genome Biol. 15:R77-R77(2014).
RN   [2] {ECO:0000313|EnsemblPlants:Bo9g095430.1}
RP   IDENTIFICATION.
RG   EnsemblPlants;
RL   Submitted (MAR-2015) to UniProtKB.
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DR   AlphaFoldDB; A0A0D3E9J4; -.
DR   EnsemblPlants; Bo9g095430.1; Bo9g095430.1; Bo9g095430.
DR   Gramene; Bo9g095430.1; Bo9g095430.1; Bo9g095430.
DR   eggNOG; KOG1075; Eukaryota.
DR   HOGENOM; CLU_000680_14_2_1; -.
DR   OMA; AMENMSQ; -.
DR   Proteomes; UP000032141; Chromosome C9.
DR   GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR   GO; GO:0004523; F:RNA-DNA hybrid ribonuclease activity; IEA:InterPro.
DR   CDD; cd06222; RNase_H_like; 1.
DR   InterPro; IPR044730; RNase_H-like_dom_plant.
DR   InterPro; IPR002156; RNaseH_domain.
DR   InterPro; IPR026960; RVT-Znf.
DR   PANTHER; PTHR46736:SF95; RNASE H DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR46736; ZF-RVT DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF13456; RVT_3; 1.
DR   Pfam; PF13966; zf-RVT; 1.
PE   4: Predicted;
KW   Reference proteome {ECO:0000313|Proteomes:UP000032141}.
FT   DOMAIN          83..150
FT                   /note="Reverse transcriptase zinc-binding"
FT                   /evidence="ECO:0000259|Pfam:PF13966"
FT   DOMAIN          259..361
FT                   /note="RNase H type-1"
FT                   /evidence="ECO:0000259|Pfam:PF13456"
SQ   SEQUENCE   424 AA;  49185 MW;  A6DE0D156F076BD1 CRC64;
     MRVSDLINQE SKDWDVNLLE KYVNRVDIPL IRSLAISSTH RRDTFYWSYI RNGQYTVKLG
     YWVARNLLKT EEEKEVVEPS IIELQAFAWK LKAPKKICHL IWQLLTGHVA VTRNLARRNM
     KCDNYCPRCG EPEESVTDAI FECPPALQAW SLSSTPASPN LFPVSSVYTN MDYLFWRKNS
     IIDPEQDRDP YPWIIWYIWK ARNNKLFRGI DRDPLELVRY AESECQAWFD ANEVPQTVIH
     ENNTEDPQVL SLGNICLLDG SWTPAAHFSG CGWVWMDNGG NIHLMGTRNI TRRESALHLE
     LEALRWAMEN MSQHSTCQSF GTDCKDLIAM IKEPHVWTSF ATELERIETL QICFPDFSII
     HWLCASHSCS GVKSESTRNR IKSTWNRDSK IKMVGSVTEA HDSKVEALWW SYRITQRMIG
     EDGV
//