ID   A0A0D3EPY8_9ORYZ        Unreviewed;      1159 AA.
AC   A0A0D3EPY8;
DT   29-APR-2015, integrated into UniProtKB/TrEMBL.
DT   29-APR-2015, sequence version 1.
DT   27-MAR-2024, entry version 40.
DE   RecName: Full=PHD-type domain-containing protein {ECO:0008006|Google:ProtNLM};
OS   Oryza barthii.
OC   Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC   Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC   Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX   NCBI_TaxID=65489 {ECO:0000313|EnsemblPlants:OBART01G18970.1};
RN   [1] {ECO:0000313|EnsemblPlants:OBART01G18970.1}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=IRGC 105608 {ECO:0000313|EnsemblPlants:OBART01G18970.1};
RX   DOI=10.1007/s12284-009-9025-z;
RA   Rounsley S., Marri P.R., Yu Y., He R., Sisneros N., Goicoechea J.L.,
RA   Lee S.J., Angelova A., Kudrna D., Luo M., Affourtit J., Desany B.,
RA   Knight J., Niazi F., Egholm M., Wing R.A.;
RT   "De novo next generation sequencing of plant genomes.";
RL   Rice 2:35-43(2009).
RN   [2] {ECO:0000313|EnsemblPlants:OBART01G18970.1}
RP   IDENTIFICATION.
RG   EnsemblPlants;
RL   Submitted (MAR-2015) to UniProtKB.
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DR   AlphaFoldDB; A0A0D3EPY8; -.
DR   STRING; 65489.A0A0D3EPY8; -.
DR   PaxDb; 65489-OBART01G18970-1; -.
DR   EnsemblPlants; OBART01G18970.1; OBART01G18970.1; OBART01G18970.
DR   Gramene; OBART01G18970.1; OBART01G18970.1; OBART01G18970.
DR   eggNOG; ENOG502QQIW; Eukaryota.
DR   HOGENOM; CLU_008938_0_0_1; -.
DR   Proteomes; UP000026960; Chromosome 1.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR   Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR   InterPro; IPR003656; Znf_BED.
DR   InterPro; IPR011011; Znf_FYVE_PHD.
DR   InterPro; IPR001965; Znf_PHD.
DR   InterPro; IPR019787; Znf_PHD-finger.
DR   InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR   PANTHER; PTHR46951; BED-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR   PANTHER; PTHR46951:SF3; BED-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR   Pfam; PF00628; PHD; 2.
DR   Pfam; PF02892; zf-BED; 1.
DR   SMART; SM00249; PHD; 3.
DR   SUPFAM; SSF57903; FYVE/PHD zinc finger; 3.
DR   PROSITE; PS50808; ZF_BED; 2.
DR   PROSITE; PS50016; ZF_PHD_2; 3.
PE   4: Predicted;
KW   Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW   Reference proteome {ECO:0000313|Proteomes:UP000026960};
KW   Zinc {ECO:0000256|ARBA:ARBA00022833};
KW   Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW   ProRule:PRU00027}.
FT   DOMAIN          85..141
FT                   /note="BED-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50808"
FT   DOMAIN          223..274
FT                   /note="BED-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50808"
FT   DOMAIN          883..933
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50016"
FT   DOMAIN          1005..1063
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50016"
FT   DOMAIN          1059..1109
FT                   /note="PHD-type"
FT                   /evidence="ECO:0000259|PROSITE:PS50016"
FT   REGION          1..71
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          150..183
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          492..514
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   REGION          641..662
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        1..35
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        36..58
FT                   /note="Pro residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        498..514
FT                   /note="Polar residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   1159 AA;  131473 MW;  D4D9FD4810376066 CRC64;
     MDGVDKDKGN GKVHFRDSSP QEAFRTYKRR RQPRPEPQQQ PQPQPQSEPE PQQQPQPQPQ
     PEAEAEAEAK AADVLARQVT ETFWKSRDIG WKHGIMIDEN RQHWKCMYCH LTRYGGGVSR
     LKRHLAGDLD VKMCPKVPAD VSEKIREHLR KKRERRKKRA AQNRDNCVTA KSTSDDIKSG
     KDPLPVDSEV LTGVDTVLEE VTNQTNHDNQ DLTYPKATML LRGIRDIGWE HAVDLDGNKR
     RWKCKWCSLC RSGGVTTLKA HLTDSSCPNI PKEISKKVLN FIEEKRAARH LFNSAAKSPF
     NVKFDEDAVN LSEIQVEGTP PLTDDRQPLG NSLHIQTSEC TINEFEKVAA GSNQQGAEHS
     NQLLNHGGQL MKSSDQPEEH CTLEHGRCQV LDNNKQQTMD NKTDNPEHKE VLKHPKKTRF
     NIRKHIVIVD ESASHWRCRY CGLDGYGKTS RLHFHLAAVF RHPKCPSVPK EVFAKARHHI
     HLKRRLNVKK AGQQARSRPH ILGQSSQQQQ NNNPVLSNYP TKLRDNAWEH SLIHDKEKGH
     WKCKWCSLEG YHGITRLKWH LVGWQNRPQC LNVPEDVAKT IRDKMISREK QKEGRLNFDV
     IDSCNMPCSS ESLQFDQENF AEGKGSSEDF NQAERQSNTL NTVCNTTHPP QNSNNYQGLQ
     ENGLYSSKNK SEKQTERYDC WSHWRYVLDG LMHLPCALEG PGIQSCIRDV LLYGSAEFGT
     VGDKVEMDSN RKVSSDGNIA KCQSVLVDVL KSENFALLCN VLGRAVHQDE QRTKYFDFTM
     IDSRMKNGDY GRAPLLFKHD LKMLWEDLKM AGQDIIDLAN NLSSLTETER GSDDSEENLK
     GAAATNLEPM NMVKSTASVL STSQGFNQLD QPDPMDVCDE QNGTNCNECG KVAKIDSILT
     CKRCMLAFHV SCIEPPVPST STGSWCCKTC STICNESAEV GMALVHYEPN RLHGHCVACK
     DLEFCRPPRC EETASERAPA DNSRAIVIPS AEPVEDVELS DIDVRGLCKM CGNPEEKDKR
     FLVCGHTHCL YKYYHISCLK ATQIASDKQL DKPCWYCPSC LCRVCHSDRD DDLTILCDGC
     DEAYHLYCIT PRRTSIPKGK WYCSSCAIER AKEGMARHEK RMLKLHRKDD PGLQGMRYEM
     VDMILAAAEM LSDDEQQGT
//