ID A0A0D9Y424_9ORYZ Unreviewed; 771 AA.
AC A0A0D9Y424;
DT 27-MAY-2015, integrated into UniProtKB/TrEMBL.
DT 27-MAY-2015, sequence version 1.
DT 27-MAR-2024, entry version 52.
DE RecName: Full=ubiquitinyl hydrolase 1 {ECO:0000256|ARBA:ARBA00012759};
DE EC=3.4.19.12 {ECO:0000256|ARBA:ARBA00012759};
OS Oryza glumipatula.
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; BOP clade;
OC Oryzoideae; Oryzeae; Oryzinae; Oryza.
OX NCBI_TaxID=40148 {ECO:0000313|EnsemblPlants:OGLUM01G05450.1};
RN [1] {ECO:0000313|EnsemblPlants:OGLUM01G05450.1}
RP NUCLEOTIDE SEQUENCE.
RA Wing R.A., Panaud O., Oliveira A.C.;
RT "Oryza genome evolution.";
RL Submitted (AUG-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|EnsemblPlants:OGLUM01G05450.1}
RP IDENTIFICATION.
RG EnsemblPlants;
RL Submitted (APR-2015) to UniProtKB.
CC -!- CATALYTIC ACTIVITY:
CC Reaction=Thiol-dependent hydrolysis of ester, thioester, amide, peptide
CC and isopeptide bonds formed by the C-terminal Gly of ubiquitin (a 76-
CC residue protein attached to proteins as an intracellular targeting
CC signal).; EC=3.4.19.12; Evidence={ECO:0000256|ARBA:ARBA00000707};
CC -!- SIMILARITY: Belongs to the peptidase C19 family.
CC {ECO:0000256|ARBA:ARBA00009085}.
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DR AlphaFoldDB; A0A0D9Y424; -.
DR STRING; 40148.A0A0D9Y424; -.
DR EnsemblPlants; OGLUM01G05450.1; OGLUM01G05450.1; OGLUM01G05450.
DR EnsemblPlants; OGLUM01G05450.2; OGLUM01G05450.2; OGLUM01G05450.
DR Gramene; OGLUM01G05450.1; OGLUM01G05450.1; OGLUM01G05450.
DR Gramene; OGLUM01G05450.2; OGLUM01G05450.2; OGLUM01G05450.
DR eggNOG; KOG0944; Eukaryota.
DR HOGENOM; CLU_009884_1_0_1; -.
DR Proteomes; UP000026961; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-KW.
DR GO; GO:1990450; F:linear polyubiquitin binding; IEA:EnsemblPlants.
DR GO; GO:0061815; F:Met1-linked polyubiquitin deubiquitinase activity; IEA:EnsemblPlants.
DR GO; GO:0008270; F:zinc ion binding; IEA:InterPro.
DR GO; GO:0009734; P:auxin-activated signaling pathway; IEA:EnsemblPlants.
DR GO; GO:0071370; P:cellular response to gibberellin stimulus; IEA:EnsemblPlants.
DR GO; GO:0009793; P:embryo development ending in seed dormancy; IEA:EnsemblPlants.
DR GO; GO:0009965; P:leaf morphogenesis; IEA:EnsemblPlants.
DR GO; GO:0019538; P:protein metabolic process; IEA:UniProt.
DR GO; GO:0042127; P:regulation of cell population proliferation; IEA:EnsemblPlants.
DR GO; GO:0048767; P:root hair elongation; IEA:EnsemblPlants.
DR CDD; cd02658; Peptidase_C19B; 1.
DR CDD; cd14295; UBA1_atUBP14; 1.
DR CDD; cd14388; UBA2_atUBP14; 1.
DR Gene3D; 3.90.70.10; Cysteine proteinases; 1.
DR Gene3D; 1.10.8.10; DNA helicase RuvA subunit, C-terminal domain; 2.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 2.
DR InterPro; IPR038765; Papain-like_cys_pep_sf.
DR InterPro; IPR001394; Peptidase_C19_UCH.
DR InterPro; IPR015940; UBA.
DR InterPro; IPR009060; UBA-like_sf.
DR InterPro; IPR016652; Ubiquitinyl_hydrolase.
DR InterPro; IPR041432; UBP13_Znf-UBP_var.
DR InterPro; IPR018200; USP_CS.
DR InterPro; IPR028889; USP_dom.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR InterPro; IPR001607; Znf_UBP.
DR PANTHER; PTHR21646; UBIQUITIN CARBOXYL-TERMINAL HYDROLASE; 1.
DR PANTHER; PTHR21646:SF10; UBIQUITIN CARBOXYL-TERMINAL HYDROLASE 14; 1.
DR Pfam; PF00627; UBA; 2.
DR Pfam; PF00443; UCH; 1.
DR Pfam; PF02148; zf-UBP; 1.
DR Pfam; PF17807; zf-UBP_var; 1.
DR PIRSF; PIRSF016308; UBP; 2.
DR SMART; SM00165; UBA; 2.
DR SMART; SM00290; ZnF_UBP; 1.
DR SUPFAM; SSF54001; Cysteine proteinases; 1.
DR SUPFAM; SSF57850; RING/U-box; 1.
DR SUPFAM; SSF46934; UBA-like; 1.
DR PROSITE; PS50030; UBA; 2.
DR PROSITE; PS00973; USP_2; 1.
DR PROSITE; PS50235; USP_3; 1.
DR PROSITE; PS50271; ZF_UBP; 1.
PE 3: Inferred from homology;
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723,
KW ECO:0000256|PIRSR:PIRSR016308-3};
KW Reference proteome {ECO:0000313|Proteomes:UP000026961};
KW Ubl conjugation pathway {ECO:0000256|ARBA:ARBA00022786};
KW Zinc {ECO:0000256|ARBA:ARBA00022833, ECO:0000256|PIRSR:PIRSR016308-3};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00502}.
FT DOMAIN 159..269
FT /note="UBP-type"
FT /evidence="ECO:0000259|PROSITE:PS50271"
FT DOMAIN 311..771
FT /note="USP"
FT /evidence="ECO:0000259|PROSITE:PS50235"
FT DOMAIN 585..626
FT /note="UBA"
FT /evidence="ECO:0000259|PROSITE:PS50030"
FT DOMAIN 646..686
FT /note="UBA"
FT /evidence="ECO:0000259|PROSITE:PS50030"
FT BINDING 183
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000256|PIRSR:PIRSR016308-3"
FT BINDING 186
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000256|PIRSR:PIRSR016308-3"
FT BINDING 203
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000256|PIRSR:PIRSR016308-3"
FT BINDING 216
FT /ligand="Zn(2+)"
FT /ligand_id="ChEBI:CHEBI:29105"
FT /evidence="ECO:0000256|PIRSR:PIRSR016308-3"
SQ SEQUENCE 771 AA; 85877 MW; E7D92B8EA934D499 CRC64;
MDLLRSHLHK VRIPEPGSRI HKDECCVSFD TPRSEGGLYV DMTSFLGFGR EHVAWNYEKS
GNPVYLHIVQ RRKPEPDDEA DRPLKKPTLL AIGVEGGFTD QEPEYDEAFE IVILPEFTSL
PFPSIDLPEK VRIAVDKVIL AESADRKQQL ASWVADKKKV SAHAMDLKQL DNGVIVPPTG
WKCSKCDKTE NLWLNLTDGM ILCGRRLWDG SGGNNHAIEH YEQTKYPLAV KLGTITADLE
AADVFSYPED DSVEDPLLAQ HLSHFGIDFS SLQKTEMTTA ERELDHNTNY DWNRIQESGK
DAELLYGPGY TGLVNLGNSY FEKQSLKAAF AIAPADPTLD LNMQMTKLAH GMLSGKYSVP
NQEGQEGIHP RMFKTVIAAK HPEFSSMRQQ DALDFFLHLI DQVDQANTGN HELNPFTGFK
FIIEERLQCP SGKVSYNKRS DYILSLNIPL HEATNKEQLE AFHEKKAAMD LDGKEVSNEE
IVRPRVPLEA CLASFSGAEE VPEFYSTALN SKTTAIKTAG FKTFPDYLVL QMRKFVMEAG
WVPKKLDVPD IIDISHMRSK GIQPGEELLP EGASGDNKAE PVHPVASEDI VSQLASMGFN
YLHCQKAAIS TSNTGVEEAM NWLLSHMDDP DINDPISKDS QAAEQTVDET SVQTLVSFGF
QEDVARKALA ASGGNIERAT DWIFSHPEAS SSVPTDSSTS NMEDDDAHIP DGSGRYKLMA
FVSHMGTSTH CGHYVAHVLK DGRWVIFNDS KVAASVDLPK DMGYLYFFQR I
//
