ID   A0A0J7BLK8_9BACT        Unreviewed;       480 AA.
AC   A0A0J7BLK8;
DT   14-OCT-2015, integrated into UniProtKB/TrEMBL.
DT   14-OCT-2015, sequence version 1.
DT   13-SEP-2023, entry version 34.
DE   SubName: Full=RNA polymerase, sigma-54 factor (Sigma N) {ECO:0000313|EMBL:KMP11297.1};
GN   ORFNames=UZ36_04985 {ECO:0000313|EMBL:KMP11297.1};
OS   Candidatus Nitromaritima sp. SCGC AAA799-C22.
OC   Bacteria; Nitrospinae/Tectomicrobia group; Nitrospinota; Nitrospinia;
OC   Nitrospinales; Nitrospinaceae; Candidatus Nitromaritima.
OX   NCBI_TaxID=1628279 {ECO:0000313|EMBL:KMP11297.1, ECO:0000313|Proteomes:UP000036407};
RN   [1] {ECO:0000313|EMBL:KMP11297.1, ECO:0000313|Proteomes:UP000036407}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=SCGC_AAA799_C22 {ECO:0000313|EMBL:KMP11297.1};
RA   Ngugi D.K., Blom J., Stepanauskas R., Stingl U.;
RT   "Diversification and niche adaptations of Nitrospina-like bacteria in the
RT   poly-extreme interfaces of the Atlantis II Deep brine from the Red Sea.";
RL   Submitted (FEB-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC       {ECO:0000256|ARBA:ARBA00008798}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KMP11297.1}.
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DR   EMBL; JZKJ01000022; KMP11297.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A0J7BLK8; -.
DR   PATRIC; fig|1628279.3.peg.660; -.
DR   Proteomes; UP000036407; Unassembled WGS sequence.
DR   GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR   GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR   GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR   GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR   Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR   Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR   InterPro; IPR000394; RNA_pol_sigma_54.
DR   InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR   InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR   InterPro; IPR038709; RpoN_core-bd_sf.
DR   NCBIfam; TIGR02395; rpoN_sigma; 1.
DR   PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR   Pfam; PF00309; Sigma54_AID; 1.
DR   Pfam; PF04963; Sigma54_CBD; 1.
DR   Pfam; PF04552; Sigma54_DBD; 1.
DR   PIRSF; PIRSF000774; RpoN; 1.
DR   PRINTS; PR00045; SIGMA54FCT.
DR   PROSITE; PS00717; SIGMA54_1; 1.
DR   PROSITE; PS00718; SIGMA54_2; 1.
DR   PROSITE; PS50044; SIGMA54_3; 1.
PE   3: Inferred from homology;
KW   DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW   DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW   Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW   Reference proteome {ECO:0000313|Proteomes:UP000036407};
KW   Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW   Transcription {ECO:0000256|ARBA:ARBA00023163};
KW   Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW   Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT   DOMAIN          119..306
FT                   /note="RNA polymerase sigma factor 54 core-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04963"
FT   DOMAIN          320..478
FT                   /note="RNA polymerase sigma factor 54 DNA-binding"
FT                   /evidence="ECO:0000259|Pfam:PF04552"
FT   REGION          59..95
FT                   /note="Disordered"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
FT   COMPBIAS        65..93
FT                   /note="Basic and acidic residues"
FT                   /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ   SEQUENCE   480 AA;  55502 MW;  C7FA86D4D616BABF CRC64;
     MAIDMKLNVT LKMTQKLVMT PMLQQAIKLL PLARLELAQQ VRQEIMENPV LEEILEDEEF
     QDEEEKKAVE NTAEPKENFD TPQEAEHTME NPDMDWDSYF QDNIDRGMSA ESYTERPSIE
     ATYKKEPSLS DHLHWQLNLS VDGEKDKFIG SCIIGNIQND GYLNAEIDEL CEISHAEEEE
     VLKVLKIIQG FEPVGVAARS LKECLMIQAQ SNPDCSPLIL KLIENHLNRL EERYLMKIAS
     ELKVRVELII EAVKKIKEFN PKPGLTFSSE QIDYVVPDVF VVKTDKGYDV TLNDEGIPQL
     RISPYYHNLL KNTKEGATKE YLENKHRSAL WLIKSIDQRR QTIYKVGKSI VKLQEEFLDR
     GLSYLKPMVL KDVAKDIEMH ESTVSRITTN KYIDTPQGVF ELKFFFHSGI KSYMGNNMSS
     IRVKNIIKEI VASEDERNPL TDDEMVQVLM RKNAKIARRT ITKYRKELNI PPASKRKKIF
//