ID A0A0S7BTS8_9CHLR Unreviewed; 473 AA.
AC A0A0S7BTS8;
DT 17-FEB-2016, integrated into UniProtKB/TrEMBL.
DT 17-FEB-2016, sequence version 1.
DT 24-JAN-2024, entry version 30.
DE SubName: Full=RNA polymerase, sigma 54 subunit, RpoN/SigL {ECO:0000313|EMBL:GAP41262.1};
GN ORFNames=ATC1_131247 {ECO:0000313|EMBL:GAP41262.1};
OS Flexilinea flocculi.
OC Bacteria; Chloroflexota; Anaerolineae; Anaerolineales; Anaerolineaceae;
OC Flexilinea.
OX NCBI_TaxID=1678840 {ECO:0000313|EMBL:GAP41262.1};
RN [1] {ECO:0000313|EMBL:GAP41262.1}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=TC1 {ECO:0000313|EMBL:GAP41262.1};
RA Matsuura N., Tourlousse D.M., Sun L., Toyonaga M., Kuroda K., Ohashi A.,
RA Cruz R., Yamaguchi T., Sekiguchi Y.;
RT "Draft Genome Sequence of Anaerolineae Strain TC1, a Novel Isolate from a
RT Methanogenic Wastewater Treatment System.";
RL Genome Announc. 3:e01104-15(2015).
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; DF968181; GAP41262.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A0S7BTS8; -.
DR STRING; 1678840.ATC1_131247; -.
DR PATRIC; fig|1678840.3.peg.2693; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000053370; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR001387; Cro/C1-type_HTH.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS50943; HTH_CROC1; 1.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000053370};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 371..417
FT /note="HTH cro/C1-type"
FT /evidence="ECO:0000259|PROSITE:PS50943"
SQ SEQUENCE 473 AA; 54080 MW; 94641FE12B2E0A3C CRC64;
MYQNIKQKTD TRTTISIHLA KTMEMLSMSA DEVREQVESE LSINPALERI DERICPTCKR
PLPQQGICQF CGVPKSDSDH ENIVFVSPRE DFYSGKYSSY SNSYMDEPDV DSAQKEDLPT
YVLRQIGPDL LEDQKKIAAY LLTGLDEDGF LTTSVHEIAN YYHVLPSKIE EVIKLIQHAD
PAGVGSRNPQ EALLVQIQHL SSIVNIPSGT KELVEESYDL LMHGKYREIS KKHALSVKQV
QNIEKFIREN LNPFPGRAFW GENIFPDDRD LDTFHQPDIL IYYLNDDPKN QLVVEIIMPI
TGFLQVNPIF KTELRNAPEL KAEEWKNDIE RASLLVKCIN QRNNTMVRLM QILVTLQSDY
IRHGDMSIKP ITRAQVAKEL DVHESTISRA VSNKTVMLPN KKVIPLASFF DRSLNVRTII
KDLVKEEKKP LTDAKIVDIL SGMGFDIARR TVAKYRAMEG ILPAHMRNVI NMR
//
