ID   A0A0V0V3R4_9BILA        Unreviewed;       866 AA.
AC   A0A0V0V3R4;
DT   16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT   16-MAR-2016, sequence version 1.
DT   08-NOV-2023, entry version 22.
DE   RecName: Full=Small ribosomal subunit protein mS39 {ECO:0000256|ARBA:ARBA00035134};
GN   ORFNames=T09_12490 {ECO:0000313|EMBL:KRX58159.1};
OS   Trichinella sp. T9.
OC   Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC   Trichinellida; Trichinellidae; Trichinella.
OX   NCBI_TaxID=181606 {ECO:0000313|EMBL:KRX58159.1, ECO:0000313|Proteomes:UP000054681};
RN   [1] {ECO:0000313|EMBL:KRX58159.1, ECO:0000313|Proteomes:UP000054681}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ISS409 {ECO:0000313|EMBL:KRX58159.1};
RA   Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT   "Evolution of Trichinella species and genotypes.";
RL   Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000256|ARBA:ARBA00004173}.
CC   -!- SIMILARITY: Belongs to the mitochondrion-specific ribosomal protein
CC       mS39 family. {ECO:0000256|ARBA:ARBA00008551}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KRX58159.1}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; JYDN01000090; KRX58159.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A0V0V3R4; -.
DR   Proteomes; UP000054681; Unassembled WGS sequence.
DR   GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR   GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0016491; F:oxidoreductase activity; IEA:UniProtKB-KW.
DR   GO; GO:0043024; F:ribosomal small subunit binding; IEA:InterPro.
DR   GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR   GO; GO:0032543; P:mitochondrial translation; IEA:InterPro.
DR   GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
DR   CDD; cd05334; DHPR_SDR_c_like; 1.
DR   Gene3D; 3.40.50.720; NAD(P)-binding Rossmann-like Domain; 1.
DR   Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR   InterPro; IPR036291; NAD(P)-bd_dom_sf.
DR   InterPro; IPR002885; Pentatricopeptide_rpt.
DR   InterPro; IPR037387; PTCD3.
DR   InterPro; IPR020904; Sc_DH/Rdtase_CS.
DR   InterPro; IPR002347; SDR_fam.
DR   InterPro; IPR011990; TPR-like_helical_dom_sf.
DR   NCBIfam; TIGR00756; PPR; 1.
DR   PANTHER; PTHR16276; PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3; 1.
DR   PANTHER; PTHR16276:SF1; PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3, MITOCHONDRIAL; 1.
DR   Pfam; PF00106; adh_short; 1.
DR   Pfam; PF13812; PPR_3; 2.
DR   SUPFAM; SSF51735; NAD(P)-binding Rossmann-fold domains; 1.
DR   PROSITE; PS00061; ADH_SHORT; 1.
DR   PROSITE; PS51375; PPR; 1.
PE   3: Inferred from homology;
KW   Mitochondrion {ECO:0000256|ARBA:ARBA00023128};
KW   Oxidoreductase {ECO:0000256|ARBA:ARBA00023002};
KW   Reference proteome {ECO:0000313|Proteomes:UP000054681};
KW   Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274};
KW   Ribosomal protein {ECO:0000256|ARBA:ARBA00022980};
KW   RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW   rRNA-binding {ECO:0000256|ARBA:ARBA00022730};
KW   Translation regulation {ECO:0000256|ARBA:ARBA00022845}.
FT   REPEAT          450..484
FT                   /note="PPR"
FT                   /evidence="ECO:0000256|PROSITE-ProRule:PRU00708"
SQ   SEQUENCE   866 AA;  98069 MW;  18A6A6EB24D477CF CRC64;
     MAGRVIVYGG AGALGSKVVE HFAARNWWTC SIDLLKNDTA SCNIVVNDST DFILQGEEVV
     SKVTDAIANE KVDAILCLAG GWTGGSAKKK DFFLSCQQMW KQSVWTSVIS CRLGSLFLKT
     KGLLVFTGAA AALQPTPTMM AYGMAKAAVQ QLARSAGCPA GGLPEESTCL AILPVTLDTP
     ANRKAMPKAD TSSWTQLSYI VDMISGWISD YGSRPKSGSL IKLTTVNGNT KLVKLDTLRC
     FIIRRCSIFV QESGTAAVPT ESALDIPDRI PRSHTDLLES LASTVKDDPT AGHYAYMDDP
     YLIPSSNAAK RSYLLGKYSG KNAARYFARE FPTLFMLDYD EPRLNAFRPQ KLPVEENGST
     EEDLIDRMRK IHVQAAIAVY ENAVKKGVQI SQETLLAFLE FLCYYNATQP NLEISAERRW
     FERGFHENCS KNWKERGLAE KIFQTIQPET RRAYAAIING LLKYNSYLKA EEMFRKMKEA
     SLKPDIDLYN AMLDSVWQLR ADNKERWQYC LQLLNEMRDD DIQPDVQTFN TLLWTLKAMR
     FWKFSPKYAM EVYQEMLHLD LEPTLTTYLC LVEIFMKSPD FESLVEQIVS RLRGKSLKTE
     NQRDELFFPK IMQRCCENGQ SVEIADCIHE ILTFKNNAAC IGSFQAETVY YENYLTLVAR
     HGSSFEEFFK YYDRFVPRNY SPNVRMFREL LHLVDSTGSY EHLTRIWSEM LLHGQVVRYN
     DLLLELLTLV TSDFALSSGF ERCKDDLAKL SWNTYTSILN GRGQVDANII ALLSLVSAQT
     AGEQEEAWAV IIRSLFDALE HTVAQAVSEE VGLSRERVQG KPSVDVLEKL LSLLNSTDHP
     ELYKKLQNMV KSERKQQIND ENFDSD
//