ID   A0A0V0VI02_9BILA        Unreviewed;       974 AA.
AC   A0A0V0VI02;
DT   16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT   16-MAR-2016, sequence version 1.
DT   08-NOV-2023, entry version 20.
DE   SubName: Full=28S ribosomal protein S35, mitochondrial {ECO:0000313|EMBL:KRX63168.1};
GN   ORFNames=T09_2126 {ECO:0000313|EMBL:KRX63168.1};
OS   Trichinella sp. T9.
OC   Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC   Trichinellida; Trichinellidae; Trichinella.
OX   NCBI_TaxID=181606 {ECO:0000313|EMBL:KRX63168.1, ECO:0000313|Proteomes:UP000054681};
RN   [1] {ECO:0000313|EMBL:KRX63168.1, ECO:0000313|Proteomes:UP000054681}
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=ISS409 {ECO:0000313|EMBL:KRX63168.1};
RA   Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT   "Evolution of Trichinella species and genotypes.";
RL   Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC   -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC   -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC       whole genome shotgun (WGS) entry which is preliminary data.
CC       {ECO:0000313|EMBL:KRX63168.1}.
CC   ---------------------------------------------------------------------------
CC   Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC   Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC   ---------------------------------------------------------------------------
DR   EMBL; JYDN01000033; KRX63168.1; -; Genomic_DNA.
DR   AlphaFoldDB; A0A0V0VI02; -.
DR   Proteomes; UP000054681; Unassembled WGS sequence.
DR   GO; GO:0005739; C:mitochondrion; IEA:GOC.
DR   GO; GO:0005634; C:nucleus; IEA:UniProtKB-SubCell.
DR   GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR   GO; GO:0003677; F:DNA binding; IEA:InterPro.
DR   GO; GO:0003735; F:structural constituent of ribosome; IEA:InterPro.
DR   GO; GO:0006310; P:DNA recombination; IEA:InterPro.
DR   GO; GO:0006303; P:double-strand break repair via nonhomologous end joining; IEA:UniProt.
DR   GO; GO:0032543; P:mitochondrial translation; IEA:InterPro.
DR   CDD; cd17039; Ubl_ubiquitin_like; 1.
DR   Gene3D; 1.20.5.370; -; 1.
DR   Gene3D; 2.170.210.10; DNA double-strand break repair and VJ recombination XRCC4, N-terminal; 1.
DR   InterPro; IPR010585; DNA_repair_prot_XRCC4.
DR   InterPro; IPR019349; Ribosomal_mS35_mit.
DR   InterPro; IPR039848; Ribosomal_mS35_mt.
DR   InterPro; IPR000626; Ubiquitin-like_dom.
DR   InterPro; IPR029071; Ubiquitin-like_domsf.
DR   InterPro; IPR014751; XRCC4-like_C.
DR   InterPro; IPR038051; XRCC4-like_N_sf.
DR   PANTHER; PTHR13490:SF0; 28S RIBOSOMAL PROTEIN S35, MITOCHONDRIAL; 1.
DR   PANTHER; PTHR13490; MITOCHONDRIAL 28S RIBOSOMAL PROTEIN S28; 1.
DR   Pfam; PF10213; MRP-S28; 1.
DR   Pfam; PF06632; XRCC4; 1.
DR   SUPFAM; SSF54236; Ubiquitin-like; 1.
DR   SUPFAM; SSF58022; XRCC4, C-terminal oligomerization domain; 1.
DR   PROSITE; PS50053; UBIQUITIN_2; 1.
PE   4: Predicted;
KW   Coiled coil {ECO:0000256|SAM:Coils};
KW   DNA damage {ECO:0000256|ARBA:ARBA00022763};
KW   DNA repair {ECO:0000256|ARBA:ARBA00023204};
KW   Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW   Reference proteome {ECO:0000313|Proteomes:UP000054681};
KW   Ribonucleoprotein {ECO:0000313|EMBL:KRX63168.1};
KW   Ribosomal protein {ECO:0000313|EMBL:KRX63168.1}.
FT   DOMAIN          233..285
FT                   /note="Ubiquitin-like"
FT                   /evidence="ECO:0000259|PROSITE:PS50053"
FT   COILED          152..215
FT                   /evidence="ECO:0000256|SAM:Coils"
SQ   SEQUENCE   974 AA;  112757 MW;  7CB37CD9844942D8 CRC64;
     MQSQTVYKEC FRMIETVNGN TYFLFTVQTK TKSYTIDELD VTLIDGLDHW NCKIENEMLK
     SLASQSGLCL LDYAEVLLSA LCDEITAEGN DDVKTAFLYD VAFGSQYCQL SWKQKLSNCT
     FYHLGTATLT KIGTAEVVSS LQRLYNFSFR EITNLKETLH SLETRCERLK QERSQAFADL
     KQAVETKRYA ENELIAKFEK ILNEKKKRIR ELEDKQLFNI QQSTDSQSDS ASSNLKCMIH
     KRIGLDPELQ NLSIGETILS DDSLLKDCGI GNNDTLLLTI KIETSIRGVD ITRRITGSDK
     RMFRFFQNGI QNFNSTINDL TSLIKEEDLQ NMQFPNEKKG VLKLCAKAPQ DNEKLHNEMT
     RQLDEQISDK MHPISELKAT GCKKTLFESS IDALLCNPQN VILVGTKRRL KAASECYLIK
     NNEKQDGVSF LKSKRFISGT KQLKNFDKVD LDALQLNYLN KFDKNGKHHY GHVICCPMSK
     YNRSQESHLP AVSGKNEFAS ALKRKAVNVK SKKGKAFRCR SKSETIVVEK TTKPVSMFSN
     IDSRLYTMTL SGAKTYVLHM KTILDLNMRK PKLMPEKSVD RKSAFKGEHT LRRRPKKIHL
     ITHNIQKQKM NILAQLCLRH SSFKHWVNFS TSKSVISVTD ALIANSDETF RKLELIPKLP
     VKKAQSIRYG RFANEIMPPR EQRQPIDQDW PSVWPVAQSF KASSVPLPLR MGFQKSRSKK
     PPPDKHANLE LMKIPNFLHL TPPAIARHCD AIRKWCTPWP EQLNSDERCR YYFPIQFEYH
     DYIHAGPTVR DSRSRVVSLR VHVRDLPLDY HAKDKLLRLV GDRYDKKNDI LTITTNRCPA
     RHQNRDYSVY LLTVLFHESW KFEEWEKEKT ELDMEKYFWE NSKSEFQVKN LLKRLKKAEL
     SSKTRNGSGH CSRFAYLSQI TEEDIENKVY NILEFCEYVK AWDRYRNEET ESLENAESFG
     KAVRSLLDLP PLNK
//