ID A0A0V1JIN3_TRIPS Unreviewed; 976 AA.
AC A0A0V1JIN3;
DT 16-MAR-2016, integrated into UniProtKB/TrEMBL.
DT 16-MAR-2016, sequence version 1.
DT 27-MAR-2024, entry version 37.
DE RecName: Full=116 kDa U5 small nuclear ribonucleoprotein component {ECO:0000256|ARBA:ARBA00018774};
DE AltName: Full=U5 snRNP-specific protein, 116 kDa {ECO:0000256|ARBA:ARBA00031432};
DE Flags: Fragment;
GN Name=EFTUD2 {ECO:0000313|EMBL:KRZ34717.1};
GN Synonyms=Eftud2 {ECO:0000313|EMBL:KRX97828.1};
GN ORFNames=T4A_13489 {ECO:0000313|EMBL:KRY70606.1}, T4B_1798
GN {ECO:0000313|EMBL:KRZ34717.1}, T4C_10225
GN {ECO:0000313|EMBL:KRZ37991.1}, T4D_10354
GN {ECO:0000313|EMBL:KRY93736.1}, T4E_1047 {ECO:0000313|EMBL:KRX97828.1};
OS Trichinella pseudospiralis (Parasitic roundworm).
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Enoplea; Dorylaimia;
OC Trichinellida; Trichinellidae; Trichinella.
OX NCBI_TaxID=6337 {ECO:0000313|EMBL:KRZ34717.1, ECO:0000313|Proteomes:UP000054805};
RN [1] {ECO:0000313|Proteomes:UP000054632, ECO:0000313|Proteomes:UP000054805}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=ISS13 {ECO:0000313|EMBL:KRY70606.1}, ISS141
RC {ECO:0000313|EMBL:KRX97828.1}, ISS176 {ECO:0000313|EMBL:KRZ37991.1},
RC ISS470 {ECO:0000313|EMBL:KRY93736.1}, and ISS588
RC {ECO:0000313|EMBL:KRZ34717.1};
RA Korhonen P.K., Edoardo P., Giuseppe L.R., Gasser R.B.;
RT "Evolution of Trichinella species and genotypes.";
RL Submitted (JAN-2015) to the EMBL/GenBank/DDBJ databases.
CC -!- SUBCELLULAR LOCATION: Nucleus {ECO:0000256|ARBA:ARBA00004123}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KRZ34717.1}.
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DR EMBL; JYDU01000027; KRX97828.1; -; Genomic_DNA.
DR EMBL; JYDR01000071; KRY70606.1; -; Genomic_DNA.
DR EMBL; JYDT01000001; KRY93736.1; -; Genomic_DNA.
DR EMBL; JYDS01000002; KRZ34717.1; -; Genomic_DNA.
DR EMBL; JYDV01000051; KRZ37991.1; -; Genomic_DNA.
DR STRING; 6337.A0A0V1JIN3; -.
DR Proteomes; UP000054632; Unassembled WGS sequence.
DR Proteomes; UP000054805; Unassembled WGS sequence.
DR Proteomes; UP000054815; Unassembled WGS sequence.
DR Proteomes; UP000054826; Unassembled WGS sequence.
DR Proteomes; UP000054995; Unassembled WGS sequence.
DR GO; GO:0005681; C:spliceosomal complex; IEA:UniProtKB-KW.
DR GO; GO:0005525; F:GTP binding; IEA:UniProtKB-KW.
DR GO; GO:0003924; F:GTPase activity; IEA:InterPro.
DR GO; GO:0006397; P:mRNA processing; IEA:UniProtKB-KW.
DR GO; GO:0008380; P:RNA splicing; IEA:UniProtKB-KW.
DR CDD; cd04098; eEF2_C_snRNP; 1.
DR CDD; cd04090; EF2_II_snRNP; 1.
DR CDD; cd01683; EF2_IV_snRNP; 1.
DR CDD; cd16264; snRNP_III; 1.
DR CDD; cd04167; Snu114p; 1.
DR Gene3D; 3.30.230.10; -; 1.
DR Gene3D; 3.30.70.240; -; 1.
DR Gene3D; 3.30.70.870; Elongation Factor G (Translational Gtpase), domain 3; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 2.40.30.10; Translation factors; 1.
DR Gene3D; 3.90.1430.10; Yeast translation eEF2 (G' domain); 1.
DR InterPro; IPR041095; EFG_II.
DR InterPro; IPR035647; EFG_III/V.
DR InterPro; IPR000640; EFG_V-like.
DR InterPro; IPR004161; EFTu-like_2.
DR InterPro; IPR031950; EFTUD2_N.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR020568; Ribosomal_Su5_D2-typ_SF.
DR InterPro; IPR014721; Ribsml_uS5_D2-typ_fold_subgr.
DR InterPro; IPR044121; Snu114_GTP-bd.
DR InterPro; IPR000795; T_Tr_GTP-bd_dom.
DR InterPro; IPR009000; Transl_B-barrel_sf.
DR InterPro; IPR005517; Transl_elong_EFG/EF2_IV.
DR InterPro; IPR035655; U5-116kDa_C.
DR PANTHER; PTHR42908:SF6; 116 KDA U5 SMALL NUCLEAR RIBONUCLEOPROTEIN COMPONENT; 1.
DR PANTHER; PTHR42908; TRANSLATION ELONGATION FACTOR-RELATED; 1.
DR Pfam; PF00679; EFG_C; 1.
DR Pfam; PF14492; EFG_III; 1.
DR Pfam; PF03764; EFG_IV; 1.
DR Pfam; PF16004; EFTUD2; 1.
DR Pfam; PF00009; GTP_EFTU; 1.
DR Pfam; PF03144; GTP_EFTU_D2; 1.
DR PRINTS; PR00315; ELONGATNFCT.
DR SMART; SM00838; EFG_C; 1.
DR SMART; SM00889; EFG_IV; 1.
DR SUPFAM; SSF54980; EF-G C-terminal domain-like; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 1.
DR SUPFAM; SSF54211; Ribosomal protein S5 domain 2-like; 1.
DR SUPFAM; SSF50447; Translation proteins; 1.
DR PROSITE; PS51722; G_TR_2; 1.
PE 4: Predicted;
KW GTP-binding {ECO:0000256|ARBA:ARBA00023134};
KW mRNA processing {ECO:0000256|ARBA:ARBA00022664};
KW mRNA splicing {ECO:0000256|ARBA:ARBA00023187};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Nucleus {ECO:0000256|ARBA:ARBA00023242};
KW Reference proteome {ECO:0000313|Proteomes:UP000054815};
KW Ribonucleoprotein {ECO:0000313|EMBL:KRZ34717.1};
KW Spliceosome {ECO:0000256|ARBA:ARBA00022728}.
FT DOMAIN 130..341
FT /note="Tr-type G"
FT /evidence="ECO:0000259|PROSITE:PS51722"
FT REGION 23..43
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 1
FT /evidence="ECO:0000313|EMBL:KRZ34717.1"
SQ SEQUENCE 976 AA; 110775 MW; 4FDA16F18A269602 CRC64;
LFCKMDGDLY DEFGNYIGPE LESDLSDSDS EYDEVHQQND EADETGAVVE MNGTADAEAV
VLHEDKKYYP TALEIYGPDV ESVVQEEDTQ PLTEPIVKPV RPKKFQAIER DLPETVYNKE
YMADLMDCSN LIRNVALAGH LHHGKTCFVD CLIEQTHPTF VRRDDRDTRY TDTLNTEYER
GVGIKAMPIT IVMQDFRNKS FLLNVFDTPG HINFSDEMSA AFRMCDGVVV FVDAHEGVMM
STERTLKCAV QENLAITLCI NKIDRLILEL KLPPTDAYLK LRHTIDEVNV LLKSFSTSHE
YQILSPVNGN VFFASGKYNI CFTLLSFANL YKEIYPDIQP KDFAKRLWGD IYLNSKTREF
QRKAPSGDKP RTFVEFILEP IYKIFSQIVG EVDDTLPRVM SELNIRLTKE EQKLNIRPLL
SLIYRRFFGN FTSFVDVISQ HIPSPAENAK NKIQLIYTGP MGGQLVDGML NCNPDGPLMV
YTTKNYATPD AASFYVFGRV MSGTLHAQQD VRILGENYSI EDEEDSQTLT VGRLWIFESR
YNVEVSRVPA GNWVLIEGID EPVVKTSTIT DVYLNEDVYI FRPLKFSTQS VIKIAIEPVN
PSELPKMLDG LRKVNKSYPL LSTRVEESGE HVIFGTGELY LDCVLHDVRK VFSEIDIKVA
DPVVAFCETV VETSSLKCFC ETPNKRNKLT MVCEPMERGL AEDIESQLIT LSMNRKNLSS
ILQEKYNWDL LAARSIWAFG PDYVGPNILV DDTLPSEVDK SLLNSIRESV VQGFQWAARE
GPLCEEPIRN VKFKILDAQI SSEVLHRGGG QIIPTARRVA YSAFLMATPR LMEPYFHIEV
IAPADCVSAV YTVLARRRGH VTQDLPIPGS PLYTIKAFIP AIDSFGFETD LRTHTQGQAF
SLSEFHHWQI VPGDPLDRSI YIRPLEPQPA THLAREFMIK TRRRKGLSED VSVSKFFDDP
MLLELAKQDV NISNIR
//
