ID A0A143Q7P1_9NOCA Unreviewed; 439 AA.
AC A0A143Q7P1;
DT 08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT 08-JUN-2016, sequence version 1.
DT 24-JAN-2024, entry version 26.
DE SubName: Full=Ribonuclease D {ECO:0000313|EMBL:AMY18926.1};
DE EC=3.1.13.5 {ECO:0000313|EMBL:AMY18926.1};
GN Name=rnd {ECO:0000313|EMBL:AMY18926.1};
GN ORFNames=A3Q40_01536 {ECO:0000313|EMBL:AMY18926.1};
OS Rhodococcus sp. PBTS 1.
OC Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Nocardiaceae;
OC Rhodococcus.
OX NCBI_TaxID=1653478 {ECO:0000313|EMBL:AMY18926.1, ECO:0000313|Proteomes:UP000076180};
RN [1] {ECO:0000313|EMBL:AMY18926.1, ECO:0000313|Proteomes:UP000076180}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=PBTS 1 {ECO:0000313|EMBL:AMY18926.1,
RC ECO:0000313|Proteomes:UP000076180};
RX PubMed=27284129;
RA Stamler R.A., Vereecke D., Zhang Y., Schilkey F., Devitt N., Randall J.J.;
RT "Complete Genome and Plasmid Sequences for Rhodococcus fascians D188 and
RT Draft Sequences for Rhodococcus Isolates PBTS 1 and PBTS 2.";
RL Genome Announc. 4:0-0(2016).
RN [2] {ECO:0000313|Proteomes:UP000076180}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=PBTS 1 {ECO:0000313|Proteomes:UP000076180};
RA Stamer R., Vereecke D., Zhang Y., Schilkey F., Devitt N., Randall J.;
RT "Complete Genome and Plasmid Sequences for Rhodococcus fascians D188 and
RT Draft Sequences for Rhodococcus spp. Isolates PBTS 1 and PBTS 2.";
RL Submitted (APR-2016) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP015219; AMY18926.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A143Q7P1; -.
DR STRING; 1653478.A3Q40_01536; -.
DR KEGG; rhu:A3Q40_01536; -.
DR PATRIC; fig|1653478.3.peg.1546; -.
DR Proteomes; UP000076180; Chromosome.
DR GO; GO:0008408; F:3'-5' exonuclease activity; IEA:InterPro.
DR GO; GO:0003676; F:nucleic acid binding; IEA:InterPro.
DR GO; GO:0000166; F:nucleotide binding; IEA:InterPro.
DR GO; GO:0033890; F:ribonuclease D activity; IEA:UniProtKB-EC.
DR GO; GO:0006139; P:nucleobase-containing compound metabolic process; IEA:InterPro.
DR CDD; cd06142; RNaseD_exo; 1.
DR Gene3D; 1.10.150.80; HRDC domain; 2.
DR Gene3D; 3.30.420.10; Ribonuclease H-like superfamily/Ribonuclease H; 1.
DR InterPro; IPR002562; 3'-5'_exonuclease_dom.
DR InterPro; IPR041605; Exo_C.
DR InterPro; IPR010997; HRDC-like_sf.
DR InterPro; IPR002121; HRDC_dom.
DR InterPro; IPR044876; HRDC_dom_sf.
DR InterPro; IPR012337; RNaseH-like_sf.
DR InterPro; IPR036397; RNaseH_sf.
DR PANTHER; PTHR47649; RIBONUCLEASE D; 1.
DR PANTHER; PTHR47649:SF1; RIBONUCLEASE D; 1.
DR Pfam; PF01612; DNA_pol_A_exo1; 1.
DR Pfam; PF18305; DNA_pol_A_exoN; 1.
DR Pfam; PF00570; HRDC; 1.
DR SMART; SM00474; 35EXOc; 1.
DR SMART; SM00341; HRDC; 1.
DR SUPFAM; SSF47819; HRDC-like; 1.
DR SUPFAM; SSF53098; Ribonuclease H-like; 1.
DR PROSITE; PS50967; HRDC; 1.
PE 4: Predicted;
KW Hydrolase {ECO:0000313|EMBL:AMY18926.1};
KW Reference proteome {ECO:0000313|Proteomes:UP000076180}.
FT DOMAIN 248..328
FT /note="HRDC"
FT /evidence="ECO:0000259|PROSITE:PS50967"
FT REGION 1..37
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 439 AA; 46807 MW; 7DBB0DA52F204159 CRC64;
MPDPTAADSD TPEPTAADAA RPEPTPLLAP RDGVPPLTDT PDAVRAVAAA LAAGSGPLAV
DAERASGFRY SARAYLIQLR RRGAGTVLLD PIPVVAAGDD GRDALAALAD AVGDLEWVLH
SADQDLPGLA ELGLTPGSLY DTELAGRLAG FERVGLAAMV ERVLGLSLQK GHGAADWSTR
PLPDTWLNYA ALDVEVLVEL RDAMAEELAN QGKTDWAAQE FEHIRLAPPP APKPDRWRRT
SGIHTVKNAR TLAAIRELWT ARDDLARKRD VAPSRVLPDS AITAAAQQNP STSGELRSLP
VFGGPRQRRQ SHVWMSALER ARDLPDTALP PVAQPVTGPP PISRWARRDP AAAARLTAVR
EAVAALSERV HVPVENLCAP DTLRRLCWEW PGPPATDDLP AHVDAVLTAH GARPWQREVV
GPVVTEALAT ADAPEVTDE
//
