ID A0A151LYH8_ALLMI Unreviewed; 546 AA.
AC A0A151LYH8;
DT 08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT 08-JUN-2016, sequence version 1.
DT 24-JAN-2024, entry version 23.
DE RecName: Full=IF rod domain-containing protein {ECO:0000259|PROSITE:PS51842};
GN ORFNames=Y1Q_0017725 {ECO:0000313|EMBL:KYO17280.1};
OS Alligator mississippiensis (American alligator).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae;
OC Alligator.
OX NCBI_TaxID=8496 {ECO:0000313|EMBL:KYO17280.1};
RN [1] {ECO:0000313|EMBL:KYO17280.1, ECO:0000313|Proteomes:UP000050525}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=KSC_2009_1 {ECO:0000313|EMBL:KYO17280.1};
RX PubMed=22293439; DOI=10.1186/gb-2012-13-1-415;
RA St John J.A., Braun E.L., Isberg S.R., Miles L.G., Chong A.Y., Gongora J.,
RA Dalzell P., Moran C., Bed'hom B., Abzhanov A., Burgess S.C., Cooksey A.M.,
RA Castoe T.A., Crawford N.G., Densmore L.D., Drew J.C., Edwards S.V.,
RA Faircloth B.C., Fujita M.K., Greenwold M.J., Hoffmann F.G., Howard J.M.,
RA Iguchi T., Janes D.E., Khan S.Y., Kohno S., de Koning A.J., Lance S.L.,
RA McCarthy F.M., McCormack J.E., Merchant M.E., Peterson D.G., Pollock D.D.,
RA Pourmand N., Raney B.J., Roessler K.A., Sanford J.R., Sawyer R.H.,
RA Schmidt C.J., Triplett E.W., Tuberville T.D., Venegas-Anaya M.,
RA Howard J.T., Jarvis E.D., Guillette L.J.Jr., Glenn T.C., Green R.E.,
RA Ray D.A.;
RT "Sequencing three crocodilian genomes to illuminate the evolution of
RT archosaurs and amniotes.";
RL Genome Biol. 13:415-415(2012).
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KYO17280.1}.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR EMBL; AKHW03007029; KYO17280.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A151LYH8; -.
DR STRING; 8496.A0A151LYH8; -.
DR eggNOG; ENOG502SGVW; Eukaryota.
DR Proteomes; UP000050525; Unassembled WGS sequence.
DR GO; GO:0045095; C:keratin filament; IEA:InterPro.
DR Gene3D; 1.20.5.170; -; 1.
DR Gene3D; 1.20.5.500; Single helix bin; 1.
DR Gene3D; 1.20.5.1160; Vasodilator-stimulated phosphoprotein; 1.
DR InterPro; IPR039008; IF_rod_dom.
DR InterPro; IPR003054; Keratin_II.
DR PANTHER; PTHR45616; GATA-TYPE DOMAIN-CONTAINING PROTEIN; 1.
DR PANTHER; PTHR45616:SF34; IF ROD DOMAIN-CONTAINING PROTEIN; 1.
DR Pfam; PF00038; Filament; 1.
DR PRINTS; PR01276; TYPE2KERATIN.
DR SMART; SM01391; Filament; 1.
DR SUPFAM; SSF64593; Intermediate filament protein, coiled coil region; 3.
DR PROSITE; PS51842; IF_ROD_2; 1.
PE 4: Predicted;
KW Coiled coil {ECO:0000256|ARBA:ARBA00023054, ECO:0000256|SAM:Coils};
KW Intermediate filament {ECO:0000256|ARBA:ARBA00022754};
KW Reference proteome {ECO:0000313|Proteomes:UP000050525}.
FT DOMAIN 113..426
FT /note="IF rod"
FT /evidence="ECO:0000259|PROSITE:PS51842"
FT COILED 324..404
FT /evidence="ECO:0000256|SAM:Coils"
SQ SEQUENCE 546 AA; 57282 MW; 01A8791FA2CE6006 CRC64;
MGYGGAGGYG GGGSCIVGGL GGYGGGIGGG YGGGGFGGGG FGGGGFGGGG GFGGGGIGPV
CGFGGGGPGV GFPLGRGGPG FPGGIQPVQV DPNLMRPVHV EIDPQIQQVK QHEKEQIKTL
NNKFATFIDK VRFLEQQNKV LSTKWELLQQ QGPSGPRRDL TVLYENYIEN LRRQLESILS
QRGPLESQLH DMQNYVEEYK SKYEDEINRR TAAENEFVVL KKDVDCAYMT KVELEAKVKA
LIDEINFLRY VFEEELSQMQ TISRDLSVVV SMDNSRHLNL DSIIDEIRAQ YEQIAQSSRA
EAEAWYQSRY EELQSTAGQH GESLRNTRQE IQELTRCIQK LRSEIENVRK QCEQLQAAIA
EAEERGEMAL KDARCKLEEL ECALHKDKEE LARLLKEYQE LLNVKIALDI EIAMYRKLLE
GEECRMSEGS NVNVSVVGRT TISGGRGGFG GGFGGGIGGG IGGGICGGIG GGIGGGIGGG
GGIGGPCGIG GPIGVGGPIG IGGPCGPGGV GGMGGPCGIS GGGISGGSMV MMPVGYVNVP
NLLMCI
//
