ID A0A151P9L5_ALLMI Unreviewed; 677 AA.
AC A0A151P9L5;
DT 08-JUN-2016, integrated into UniProtKB/TrEMBL.
DT 08-JUN-2016, sequence version 1.
DT 24-JAN-2024, entry version 26.
DE RecName: Full=Small ribosomal subunit protein mS39 {ECO:0000256|ARBA:ARBA00035134};
GN Name=PTCD3 {ECO:0000313|EMBL:KYO45609.1};
GN ORFNames=Y1Q_0021304 {ECO:0000313|EMBL:KYO45609.1};
OS Alligator mississippiensis (American alligator).
OC Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
OC Archelosauria; Archosauria; Crocodylia; Alligatoridae; Alligatorinae;
OC Alligator.
OX NCBI_TaxID=8496 {ECO:0000313|EMBL:KYO45609.1};
RN [1] {ECO:0000313|EMBL:KYO45609.1, ECO:0000313|Proteomes:UP000050525}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=KSC_2009_1 {ECO:0000313|EMBL:KYO45609.1};
RX PubMed=22293439; DOI=10.1186/gb-2012-13-1-415;
RA St John J.A., Braun E.L., Isberg S.R., Miles L.G., Chong A.Y., Gongora J.,
RA Dalzell P., Moran C., Bed'hom B., Abzhanov A., Burgess S.C., Cooksey A.M.,
RA Castoe T.A., Crawford N.G., Densmore L.D., Drew J.C., Edwards S.V.,
RA Faircloth B.C., Fujita M.K., Greenwold M.J., Hoffmann F.G., Howard J.M.,
RA Iguchi T., Janes D.E., Khan S.Y., Kohno S., de Koning A.J., Lance S.L.,
RA McCarthy F.M., McCormack J.E., Merchant M.E., Peterson D.G., Pollock D.D.,
RA Pourmand N., Raney B.J., Roessler K.A., Sanford J.R., Sawyer R.H.,
RA Schmidt C.J., Triplett E.W., Tuberville T.D., Venegas-Anaya M.,
RA Howard J.T., Jarvis E.D., Guillette L.J.Jr., Glenn T.C., Green R.E.,
RA Ray D.A.;
RT "Sequencing three crocodilian genomes to illuminate the evolution of
RT archosaurs and amniotes.";
RL Genome Biol. 13:415-415(2012).
CC -!- SUBCELLULAR LOCATION: Mitochondrion {ECO:0000256|ARBA:ARBA00004173}.
CC -!- SIMILARITY: Belongs to the mitochondrion-specific ribosomal protein
CC mS39 family. {ECO:0000256|ARBA:ARBA00008551}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:KYO45609.1}.
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DR EMBL; AKHW03000533; KYO45609.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A151P9L5; -.
DR STRING; 8496.A0A151P9L5; -.
DR eggNOG; KOG4422; Eukaryota.
DR Proteomes; UP000050525; Unassembled WGS sequence.
DR GO; GO:0005739; C:mitochondrion; IEA:UniProtKB-SubCell.
DR GO; GO:1990904; C:ribonucleoprotein complex; IEA:UniProtKB-KW.
DR GO; GO:0005840; C:ribosome; IEA:UniProtKB-KW.
DR GO; GO:0043024; F:ribosomal small subunit binding; IEA:InterPro.
DR GO; GO:0019843; F:rRNA binding; IEA:UniProtKB-KW.
DR GO; GO:0032543; P:mitochondrial translation; IEA:InterPro.
DR GO; GO:0006417; P:regulation of translation; IEA:UniProtKB-KW.
DR Gene3D; 1.25.40.10; Tetratricopeptide repeat domain; 2.
DR InterPro; IPR002885; Pentatricopeptide_rpt.
DR InterPro; IPR037387; PTCD3.
DR InterPro; IPR011990; TPR-like_helical_dom_sf.
DR PANTHER; PTHR16276; PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3; 1.
DR PANTHER; PTHR16276:SF1; PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3, MITOCHONDRIAL; 1.
DR Pfam; PF01535; PPR; 1.
DR Pfam; PF13812; PPR_3; 1.
PE 3: Inferred from homology;
KW Mitochondrion {ECO:0000256|ARBA:ARBA00023128};
KW Reference proteome {ECO:0000313|Proteomes:UP000050525};
KW Ribonucleoprotein {ECO:0000256|ARBA:ARBA00023274};
KW Ribosomal protein {ECO:0000256|ARBA:ARBA00022980};
KW RNA-binding {ECO:0000256|ARBA:ARBA00022884};
KW rRNA-binding {ECO:0000256|ARBA:ARBA00022730};
KW Translation regulation {ECO:0000256|ARBA:ARBA00022845}.
FT REGION 17..36
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 677 AA; 77380 MW; D4DCFEAB8819F561 CRC64;
MAVRWLGTVS WRQSGQLRGR GRLQAPGSGR AQPGRLCSES ASLQKTVSDP GVPNEEVVIP
RRKTWDKIAV LQALASTVKR DPTSVHYMIH DDPFLIPKSS TEFHIFALSK QSGENAAKYI
IHEFPRYFER DIAEPHIPCL MPENLIPQIE GVSEAALKER IQLRKVKASV DMYDQLLQAG
SAVSLKTTNS LLDLLCFYGD REPVRDYLPD KEMTEEFKEI APIKQKEGRY LRNTKGIGIY
NWRENNNAER IFNLMPERNA HSYCTMIRGM VKHGAYMKAF IMYRDLLNER HRADVGTFNA
LLLAAPRMKE NSVERWELTK DLLTCMAQQN VQPNVLTFNN ILKGLKYCGA LGKTASLQVL
NEMKAVNIEP SLASFKHILD TFDVLPGGTG KIIVDILNNI ERENVVLQDP DDPLFFVTAM
QVCMNLKDLE LGYRVHRLLE TRGRWRLLSM NLQYAYCARF FTLLCMMEQI DEVMKWYKEM
VPSLLYPNYK IMHDLLQAVD AANSLEMLPQ VWEDLKQFNH VCRPEILKQV LTLMTREQHP
QETQMIFANC AAEIKSMLED SENTLFSHKW IASILGDMAI IFSRAGRTQD AWNMLEMLQK
QNCVPSVLVL DEVLNSIKRS NLPDQALKLV KLAAEFSLPT TPKLASRVLE EFGLSEEQKK
ILKNISDDSD SDSDSDK
//
