ID A0A180EJ26_9BACT Unreviewed; 500 AA.
AC A0A180EJ26;
DT 02-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 02-NOV-2016, sequence version 1.
DT 24-JAN-2024, entry version 29.
DE SubName: Full=RNA polymerase sigma-54 factor {ECO:0000313|EMBL:OAV43246.1};
GN ORFNames=A3850_001475 {ECO:0000313|EMBL:OAV43246.1};
OS Lewinella sp. 4G2.
OC Bacteria; Bacteroidota; Saprospiria; Saprospirales; Lewinellaceae;
OC Lewinella.
OX NCBI_TaxID=1803372 {ECO:0000313|EMBL:OAV43246.1, ECO:0000313|Proteomes:UP000076582};
RN [1] {ECO:0000313|EMBL:OAV43246.1, ECO:0000313|Proteomes:UP000076582}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=4G2 {ECO:0000313|EMBL:OAV43246.1,
RC ECO:0000313|Proteomes:UP000076582};
RA Wong S.-K., Yoshizawa S., Ogura Y., Tetsuya H., Nakajima Y., Hamasaki K.;
RT "Lewinella sp. 4G2 Genome sequencing.";
RL Submitted (MAY-2016) to the EMBL/GenBank/DDBJ databases.
CC -!- SIMILARITY: Belongs to the sigma-54 factor family.
CC {ECO:0000256|ARBA:ARBA00008798}.
CC -!- CAUTION: The sequence shown here is derived from an EMBL/GenBank/DDBJ
CC whole genome shotgun (WGS) entry which is preliminary data.
CC {ECO:0000313|EMBL:OAV43246.1}.
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DR EMBL; LVWJ02000014; OAV43246.1; -; Genomic_DNA.
DR RefSeq; WP_068214225.1; NZ_LVWJ02000014.1.
DR AlphaFoldDB; A0A180EJ26; -.
DR STRING; 1803372.A3850_001475; -.
DR OrthoDB; 9814402at2; -.
DR Proteomes; UP000076582; Unassembled WGS sequence.
DR GO; GO:0000428; C:DNA-directed RNA polymerase complex; IEA:UniProtKB-KW.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0001216; F:DNA-binding transcription activator activity; IEA:InterPro.
DR GO; GO:0016779; F:nucleotidyltransferase activity; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 1.10.10.1330; RNA polymerase sigma-54 factor, core-binding domain; 1.
DR InterPro; IPR000394; RNA_pol_sigma_54.
DR InterPro; IPR007046; RNA_pol_sigma_54_core-bd.
DR InterPro; IPR007634; RNA_pol_sigma_54_DNA-bd.
DR InterPro; IPR038709; RpoN_core-bd_sf.
DR NCBIfam; TIGR02395; rpoN_sigma; 1.
DR PANTHER; PTHR32248; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR PANTHER; PTHR32248:SF4; RNA POLYMERASE SIGMA-54 FACTOR; 1.
DR Pfam; PF00309; Sigma54_AID; 1.
DR Pfam; PF04963; Sigma54_CBD; 1.
DR Pfam; PF04552; Sigma54_DBD; 1.
DR PIRSF; PIRSF000774; RpoN; 1.
DR PRINTS; PR00045; SIGMA54FCT.
DR PROSITE; PS00718; SIGMA54_2; 1.
DR PROSITE; PS50044; SIGMA54_3; 1.
PE 3: Inferred from homology;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW DNA-directed RNA polymerase {ECO:0000256|ARBA:ARBA00022478};
KW Nucleotidyltransferase {ECO:0000256|ARBA:ARBA00022695};
KW Reference proteome {ECO:0000313|Proteomes:UP000076582};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015};
KW Transferase {ECO:0000256|ARBA:ARBA00022679}.
FT DOMAIN 108..314
FT /note="RNA polymerase sigma factor 54 core-binding"
FT /evidence="ECO:0000259|Pfam:PF04963"
FT DOMAIN 341..498
FT /note="RNA polymerase sigma factor 54 DNA-binding"
FT /evidence="ECO:0000259|Pfam:PF04552"
FT REGION 36..78
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 500 AA; 56942 MW; F4A0A2936E7B0C9C CRC64;
MIGQNFKQKQ SQTASPRQIQ LMELVQLPIG QLEARIKEEL EKNPTLEEAP PEERERQEDR
LERDGEGQAE ERNSEYDDDY FQQYLEDDPT SYNQKSQRDE DYAAPGSYTA DETSFLEHLE
NQLNAVEFET PLDRLIAQQI IGNLDGDGYL QRKLSAISDD LLIGANLDVP VKRIREVLAV
VQTLEPIGIA ARDLQECLLI QINHKVDNGD DIDDMRFADI VLAQRIIKEH FDLFSKKHYD
KLIDKLGVDE DELRDALKEI LRLNPKPASG LSGVAGGRGA RTVVPDFVLT TQDGELKLSL
TARNAPDLKV SDHYQEMLRD YREKQKASGK LTLAQKQAAG FIRQNIDSAS WFIEAIQQRQ
QTLYSVMHAI MRYQEAFFRS GDVKDLRPMI LKDIGAMTGL DISTVSRVAN SKFVQTDYGT
YGLREFFSEG MTNQEGEEVS TTEIKDVLKS IIDEENKRKP LADGTLQKEL AKRGYEIARR
TVAKYREQLG LPVARLRKEL
//
