ID A0A183CBI6_GLOPA Unreviewed; 1122 AA.
AC A0A183CBI6;
DT 07-SEP-2016, integrated into UniProtKB/TrEMBL.
DT 07-SEP-2016, sequence version 1.
DT 27-MAR-2024, entry version 29.
DE SubName: Full=HMG box domain-containing protein {ECO:0000313|WBParaSite:GPLIN_001023700};
OS Globodera pallida (Potato cyst nematode).
OC Eukaryota; Metazoa; Ecdysozoa; Nematoda; Chromadorea; Rhabditida;
OC Tylenchina; Tylenchomorpha; Tylenchoidea; Heteroderidae; Heteroderinae;
OC Globodera.
OX NCBI_TaxID=36090 {ECO:0000313|Proteomes:UP000050741, ECO:0000313|WBParaSite:GPLIN_001023700};
RN [1] {ECO:0000313|Proteomes:UP000050741}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Lindley {ECO:0000313|Proteomes:UP000050741};
RA Aslett M.;
RL Submitted (DEC-2013) to the EMBL/GenBank/DDBJ databases.
RN [2] {ECO:0000313|Proteomes:UP000050741}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Lindley {ECO:0000313|Proteomes:UP000050741};
RA Cotton J.A., Lilley C.J., Jones L.M., Kikuchi T., Reid A.J., Thorpe P.,
RA Tsai I.J., Beasley H., Blok V., Cock P.J.A., Van den Akker S.E.,
RA Holroyd N., Hunt M., Mantelin S., Naghra H., Pain A., Palomares-Rius J.E.,
RA Zarowiecki M., Berriman M., Jones J.T., Urwin P.E.;
RT "The genome and life-stage specific transcriptomes of Globodera pallida
RT elucidate key aspects of plant parasitism by a cyst nematode.";
RL Submitted (MAY-2014) to the EMBL/GenBank/DDBJ databases.
RN [3] {ECO:0000313|WBParaSite:GPLIN_001023700}
RP IDENTIFICATION.
RG WormBaseParasite;
RL Submitted (JUN-2016) to UniProtKB.
CC ---------------------------------------------------------------------------
CC Copyrighted by the UniProt Consortium, see https://www.uniprot.org/terms
CC Distributed under the Creative Commons Attribution (CC BY 4.0) License
CC ---------------------------------------------------------------------------
DR AlphaFoldDB; A0A183CBI6; -.
DR WBParaSite; GPLIN_001023700; GPLIN_001023700; GPLIN_001023700.
DR Proteomes; UP000050741; Unassembled WGS sequence.
DR GO; GO:0005634; C:nucleus; IEA:UniProtKB-UniRule.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-UniRule.
DR CDD; cd22029; HMG-box_SoxC; 1.
DR Gene3D; 1.10.30.10; High mobility group box domain; 1.
DR InterPro; IPR009071; HMG_box_dom.
DR InterPro; IPR036910; HMG_box_dom_sf.
DR PANTHER; PTHR10270; SOX TRANSCRIPTION FACTOR; 1.
DR Pfam; PF00505; HMG_box; 1.
DR SMART; SM00398; HMG; 1.
DR SUPFAM; SSF47095; HMG-box; 1.
DR PROSITE; PS50118; HMG_BOX_2; 1.
PE 4: Predicted;
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125, ECO:0000256|PROSITE-
KW ProRule:PRU00267}; Nucleus {ECO:0000256|PROSITE-ProRule:PRU00267}.
FT DOMAIN 218..286
FT /note="HMG box"
FT /evidence="ECO:0000259|PROSITE:PS50118"
FT DNA_BIND 218..286
FT /note="HMG box"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00267"
FT REGION 343..362
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 446..473
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 489..535
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 574..602
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 644..665
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 733..765
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 784..829
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 937..956
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 966..1045
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 495..509
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 510..535
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 645..660
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 789..803
FT /note="Basic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 804..829
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 978..1018
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1025..1045
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1122 AA; 122519 MW; ABDD26212062DD64 CRC64;
MRGLSPSWCF FGFVRGLSPN PFDRVRGLSS SPIIRLTGTV PELAKTMRSG LMRVMRRVDC
FLMGVVVSGI SVREWISRGR SPKSSRFSTR NGVLLNLSDS SSLVSPEGML SAMSVLTDNK
ACEELMKCEQ PEDLAASSPT GMAYFGNGPY GENGLATSVH QRPCAPVEQL YQPHQMFFPS
WQLSEEELKL VGAGQQHIQQ PFQPYTNATK CKKSGTHIKR PMNAFMVWSR DERLKICSVQ
PDKHNAEISK ELGTRWKRMT REEKRPFEQK AEELRQLHLM EYPNYKYRPR KKVKKAPLPP
AGATCPSAAE KLCPADDGAP KPKSSRCCSS ASAFSSSVAC ASKTNTQRAD KKANSKNNSG
EDKLLIGQQH FAGGHSIKVD QNEVNLGGMA SKSGGSLFKT EQEQQQQQNF LSPAISSSDC
AVSSFPAAVY APMISAISDM YQQTMERGEA GGGGGTGTLH EELEHSPESG FYDESSSLLM
MHGLLTTVGA HHQPPQHGHH PHHVHHHNHQ LGVPSSSSSV SSSSASSSNN PPTSVFYDQQ
QMLQMLSYQQ EQQQQMAQLH HQLLYSSCGG ADVQHVQRQS TEPGGETAFP GTAAASSSSS
SMNGFYSAGQ QFPGFDSLVH QHQQQLQHYQ HVQQQQQQFY FGGVGDNEKR DRKKANSKNN
SGEDKLLIGQ QHFAGGHSIK VDQNEVNLGG MASKSGGSLF KTEQEQQQQQ QRLRRFFLSR
RRLCADDQRH QRYVPADDGT GEAGGGGGGT GTLHEELEHS PESGFYDESS SLLMMHGLLT
TVGAHHQPPQ HGHHPHHVHH HNHQLGVPSS SSSVSSSSAS SSNNPPTSVF YDQQQMLQML
SYQQEQQHQM AQLHHQLLYS SCGGADVQHV QRQSTEPGGE TAFPGTAAAA ASSSSMNGFY
SAGQQFPGFD SLVHQHQQQL QHYQHVQQQQ QQFYFGGVGD NEKSSAQSSH CSAGACPATV
TGAASSATHR AEMPHHASTG TASATLDQDE LRSMSSGSTL SSSGYHSSSA QSNAHPAPGP
SVPEQAPYGT QQQQQQQQQQ ISQFEQHRKL AGLSSLPLAV PSGDALQHSQ QQHFDSQVMA
LGFSGGYYLV DEQCWPAAAV EWSQSLGQQQ RHSLQQRSLE NH
//
