ID A0A194YHQ5_SORBI Unreviewed; 1324 AA.
AC A0A194YHQ5;
DT 05-OCT-2016, integrated into UniProtKB/TrEMBL.
DT 05-OCT-2016, sequence version 1.
DT 27-MAR-2024, entry version 40.
DE RecName: Full=Homeodomain-like transcription factor superfamily protein {ECO:0008006|Google:ProtNLM};
GN ORFNames=SORBI_3010G065300 {ECO:0000313|EMBL:KXG19483.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG19483.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:KXG19483.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000769; KXG19483.1; -; Genomic_DNA.
DR STRING; 4558.A0A194YHQ5; -.
DR EnsemblPlants; KXG19483; KXG19483; SORBI_3010G065300.
DR Gramene; KXG19483; KXG19483; SORBI_3010G065300.
DR eggNOG; KOG0383; Eukaryota.
DR InParanoid; A0A194YHQ5; -.
DR OMA; MINMDST; -.
DR OrthoDB; 2910821at2759; -.
DR Proteomes; UP000000768; Chromosome 10.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0005524; F:ATP binding; IEA:UniProtKB-KW.
DR GO; GO:0016887; F:ATP hydrolysis activity; IBA:GO_Central.
DR GO; GO:0140658; F:ATP-dependent chromatin remodeler activity; IBA:GO_Central.
DR GO; GO:0003682; F:chromatin binding; IBA:GO_Central.
DR GO; GO:0003677; F:DNA binding; IBA:GO_Central.
DR GO; GO:0004386; F:helicase activity; IEA:UniProtKB-KW.
DR GO; GO:0042393; F:histone binding; IBA:GO_Central.
DR GO; GO:0046872; F:metal ion binding; IEA:UniProtKB-KW.
DR GO; GO:0006338; P:chromatin remodeling; IBA:GO_Central.
DR CDD; cd18660; CD1_tandem; 1.
DR CDD; cd18659; CD2_tandem; 1.
DR CDD; cd18793; SF2_C_SNF; 1.
DR Gene3D; 2.40.50.40; -; 2.
DR Gene3D; 1.10.10.60; Homeodomain-like; 1.
DR Gene3D; 3.40.50.300; P-loop containing nucleotide triphosphate hydrolases; 1.
DR Gene3D; 3.40.50.10810; Tandem AAA-ATPase domain; 1.
DR Gene3D; 3.30.40.10; Zinc/RING finger domain, C3HC4 (zinc finger); 1.
DR InterPro; IPR009462; CHD_II_SANT-like.
DR InterPro; IPR016197; Chromo-like_dom_sf.
DR InterPro; IPR000953; Chromo/chromo_shadow_dom.
DR InterPro; IPR023780; Chromo_domain.
DR InterPro; IPR009463; DUF1087.
DR InterPro; IPR014001; Helicase_ATP-bd.
DR InterPro; IPR001650; Helicase_C.
DR InterPro; IPR027417; P-loop_NTPase.
DR InterPro; IPR038718; SNF2-like_sf.
DR InterPro; IPR049730; SNF2/RAD54-like_C.
DR InterPro; IPR000330; SNF2_N.
DR InterPro; IPR019786; Zinc_finger_PHD-type_CS.
DR InterPro; IPR001965; Znf_PHD.
DR InterPro; IPR019787; Znf_PHD-finger.
DR InterPro; IPR013083; Znf_RING/FYVE/PHD.
DR PANTHER; PTHR45623:SF17; CHD3-TYPE CHROMATIN-REMODELING FACTOR CHR7-RELATED; 1.
DR PANTHER; PTHR45623; CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED; 1.
DR Pfam; PF06461; CHDII_SANT-like; 1.
DR Pfam; PF00385; Chromo; 2.
DR Pfam; PF06465; DUF1087; 1.
DR Pfam; PF00271; Helicase_C; 1.
DR Pfam; PF00176; SNF2-rel_dom; 1.
DR SMART; SM00298; CHROMO; 2.
DR SMART; SM00487; DEXDc; 1.
DR SMART; SM01146; DUF1086; 1.
DR SMART; SM01147; DUF1087; 1.
DR SMART; SM00490; HELICc; 1.
DR SMART; SM00249; PHD; 1.
DR SUPFAM; SSF54160; Chromo domain-like; 2.
DR SUPFAM; SSF52540; P-loop containing nucleoside triphosphate hydrolases; 2.
DR PROSITE; PS50013; CHROMO_2; 2.
DR PROSITE; PS51192; HELICASE_ATP_BIND_1; 1.
DR PROSITE; PS51194; HELICASE_CTER; 1.
DR PROSITE; PS01359; ZF_PHD_1; 1.
DR PROSITE; PS50016; ZF_PHD_2; 1.
PE 4: Predicted;
KW ATP-binding {ECO:0000256|ARBA:ARBA00022840};
KW Coiled coil {ECO:0000256|SAM:Coils};
KW Helicase {ECO:0000256|ARBA:ARBA00022806};
KW Hydrolase {ECO:0000256|ARBA:ARBA00022801};
KW Metal-binding {ECO:0000256|ARBA:ARBA00022723};
KW Nucleotide-binding {ECO:0000256|ARBA:ARBA00022741};
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Repeat {ECO:0000256|ARBA:ARBA00022737};
KW Zinc {ECO:0000256|ARBA:ARBA00022833};
KW Zinc-finger {ECO:0000256|ARBA:ARBA00022771, ECO:0000256|PROSITE-
KW ProRule:PRU00146}.
FT DOMAIN 55..101
FT /note="PHD-type"
FT /evidence="ECO:0000259|PROSITE:PS50016"
FT DOMAIN 103..183
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT DOMAIN 197..257
FT /note="Chromo"
FT /evidence="ECO:0000259|PROSITE:PS50013"
FT DOMAIN 292..479
FT /note="Helicase ATP-binding"
FT /evidence="ECO:0000259|PROSITE:PS51192"
FT DOMAIN 607..767
FT /note="Helicase C-terminal"
FT /evidence="ECO:0000259|PROSITE:PS51194"
FT REGION 19..49
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 875..935
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 1287..1324
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COILED 161..188
FT /evidence="ECO:0000256|SAM:Coils"
FT COILED 830..857
FT /evidence="ECO:0000256|SAM:Coils"
FT COMPBIAS 875..894
FT /note="Basic and acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 895..912
FT /note="Acidic residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 913..928
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT COMPBIAS 1303..1317
FT /note="Polar residues"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
SQ SEQUENCE 1324 AA; 152330 MW; 48A22B9A51AD48F9 CRC64;
MSSLVERLRV RSERRPRYAL DESDDDLPLR AVAGKGKDRQ NDAPAERIER EDAKEEACQR
CGKSDNLVSC STCTYAFHRK CLVPCLNITS DKWSCPECIS PLTEMERILD IEVLEAPQED
SSSTEPRSKK AERYLIKWKG LSYIHCSWVS EKEYSEAANI HPRLRTRLNN FRRQKEAMKK
EAERSGEDIV AIRPEWTTVD RILSSRKNSG GEREYYVKWN ELTYEECTWE NESDISAFQP
EIERFNEIQS RRKKSGDKAK ATREPRQFKE SPTFLSCGTL HPYQLEGLNF LRYSWFHNKR
VILGDEMGLG KTIQSIAFLA SLFEDKFGPH LVVAPLSTLR NWEREFATWA PQMNVVMYFG
AAASRDIIRK HEFYYPKEKL KKLKKKKSSP SNEEKKQSRI RFDVLLTSYE MINMDSNVLK
NIEWECLIVD EGHRLKNKDS KLFGQLKDYN TKHRVLLTGT PVQNNLDELF MLMHFLEGES
FGSITDLQEE FKDINQDKQI EKLHGMLKPH LLRRFKKDVM KELPPKKELI LRVELTSKQK
EYYKAILTKN YEVLARRNGG HTSLINVVME LRKLCCHGFM IDEPDFEPAN PEEGLRRLLD
SSGKMQLLDK MMVKLKEQGH RVLIYSQFQH MLDLLEDYLS YRKWSYERID GKISGAERQI
RIDRFNAKNS TRFCFLLSTR AGGLGINLAT ADTVIIYDSD WNPHADLQAM ARAHRLGQTS
KVMIYRLVSR GTIEERMMQL TKKKILLEHL VVGRLTKASN VNQEELDDII RYGSKELFDD
ENDESRQIHY DEAAIERLLD RDQVDGDESV EDEEEDEFLK GFKVANFEYI DEAKAQAERE
EEARRKAAAE AENSERLNYW DELLKGRYDV QKVEEHTAMG KGKRSRKQMA AADEEDIDLS
TEDEDYSLED DVSDNDTTLQ GNISGKRGQY SRRKSRNVDS IPLMEGEGRT LRVLGFNHAQ
RAMFLQTLNR FGFQNYDWKE YLPRLKGKSV EEIQRYAELV MTHLVEDIND SENFSDGVPK
EMMRVDDVLV RIANITLIEE KVSATGPGKI TSIFPNYLLY EFQGLSGGRI WKAEHDLLLL
RGILKHGYAR WQYISDDREN GLFEAARREL NLPSANEIIQ SNTEANGNLE GAQEVQVNST
SMSHYKEIQR KIVEFLRKRY HLLERALNLE YAVIKNKIPV PDDITEQGVP AGHVPLLPDI
SELLRELPNL EPISTNEVAP EGTAGQSEVP HLYNKMCGVL EESGGSAISS FFGDKSASSS
LANSLHQFEI VCENVIEALR PQQNGTASAI KEEVVDPATK AAAAPQQDSN GQSSTAKADM
EIDG
//
