ID A0A1B6P7P8_SORBI Unreviewed; 643 AA.
AC A0A1B6P7P8;
DT 02-NOV-2016, integrated into UniProtKB/TrEMBL.
DT 02-NOV-2016, sequence version 1.
DT 27-MAR-2024, entry version 26.
DE RecName: Full=JmjC domain-containing protein {ECO:0000259|PROSITE:PS51184};
DE Flags: Fragment;
GN ORFNames=SORBI_3009G090500 {ECO:0000313|EMBL:KXG21642.1};
OS Sorghum bicolor (Sorghum) (Sorghum vulgare).
OC Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
OC Spermatophyta; Magnoliopsida; Liliopsida; Poales; Poaceae; PACMAD clade;
OC Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum.
OX NCBI_TaxID=4558 {ECO:0000313|EMBL:KXG21642.1, ECO:0000313|Proteomes:UP000000768};
RN [1] {ECO:0000313|EMBL:KXG21642.1, ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=19189423; DOI=10.1038/nature07723;
RA Paterson A.H., Bowers J.E., Bruggmann R., Dubchak I., Grimwood J.,
RA Gundlach H., Haberer G., Hellsten U., Mitros T., Poliakov A., Schmutz J.,
RA Spannagl M., Tang H., Wang X., Wicker T., Bharti A.K., Chapman J.,
RA Feltus F.A., Gowik U., Grigoriev I.V., Lyons E., Maher C.A., Martis M.,
RA Narechania A., Otillar R.P., Penning B.W., Salamov A.A., Wang Y., Zhang L.,
RA Carpita N.C., Freeling M., Gingle A.R., Hash C.T., Keller B., Klein P.,
RA Kresovich S., McCann M.C., Ming R., Peterson D.G., Mehboob-ur-Rahman,
RA Ware D., Westhoff P., Mayer K.F., Messing J., Rokhsar D.S.;
RT "The Sorghum bicolor genome and the diversification of grasses.";
RL Nature 457:551-556(2009).
RN [2] {ECO:0000313|Proteomes:UP000000768}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=cv. BTx623 {ECO:0000313|Proteomes:UP000000768};
RX PubMed=29161754; DOI=10.1111/tpj.13781;
RA McCormick R.F., Truong S.K., Sreedasyam A., Jenkins J., Shu S., Sims D.,
RA Kennedy M., Amirebrahimi M., Weers B.D., McKinley B., Mattison A.,
RA Morishige D.T., Grimwood J., Schmutz J., Mullet J.E.;
RT "The Sorghum bicolor reference genome: improved assembly, gene annotations,
RT a transcriptome atlas, and signatures of genome organization.";
RL Plant J. 93:338-354(2018).
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DR EMBL; CM000768; KXG21642.1; -; Genomic_DNA.
DR AlphaFoldDB; A0A1B6P7P8; -.
DR STRING; 4558.A0A1B6P7P8; -.
DR EnsemblPlants; KXG21642; KXG21642; SORBI_3009G090500.
DR Gramene; KXG21642; KXG21642; SORBI_3009G090500.
DR eggNOG; KOG1246; Eukaryota.
DR InParanoid; A0A1B6P7P8; -.
DR OMA; ANERYRT; -.
DR Proteomes; UP000000768; Chromosome 9.
DR GO; GO:0000785; C:chromatin; IBA:GO_Central.
DR GO; GO:0005634; C:nucleus; IBA:GO_Central.
DR GO; GO:0034647; F:histone H3K4me/H3K4me2/H3K4me3 demethylase activity; IBA:GO_Central.
DR GO; GO:0006338; P:chromatin remodeling; IBA:GO_Central.
DR GO; GO:0010468; P:regulation of gene expression; IBA:GO_Central.
DR Gene3D; 3.30.160.360; -; 1.
DR Gene3D; 2.60.120.650; Cupin; 1.
DR InterPro; IPR003888; FYrich_N.
DR InterPro; IPR003347; JmjC_dom.
DR InterPro; IPR004198; Znf_C5HC2.
DR PANTHER; PTHR10694; LYSINE-SPECIFIC DEMETHYLASE; 1.
DR PANTHER; PTHR10694:SF140; OS05G0302300 PROTEIN; 1.
DR Pfam; PF05964; FYRN; 1.
DR Pfam; PF02373; JmjC; 1.
DR Pfam; PF02928; zf-C5HC2; 1.
DR SMART; SM00541; FYRN; 1.
DR SMART; SM00558; JmjC; 1.
DR SUPFAM; SSF51197; Clavaminate synthase-like; 1.
DR PROSITE; PS51542; FYRN; 1.
DR PROSITE; PS51184; JMJC; 1.
PE 4: Predicted;
KW Reference proteome {ECO:0000313|Proteomes:UP000000768};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT DOMAIN 113..279
FT /note="JmjC"
FT /evidence="ECO:0000259|PROSITE:PS51184"
FT REGION 1..20
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT REGION 609..643
FT /note="Disordered"
FT /evidence="ECO:0000256|SAM:MobiDB-lite"
FT NON_TER 643
FT /evidence="ECO:0000313|EMBL:KXG21642.1"
SQ SEQUENCE 643 AA; 72244 MW; CD4FDEF7940E7D07 CRC64;
MTHRCPTSSA DSEEKFGFQS GSDFTLDEFQ KYADEFKQKY FRMKGSDEIS ISEIKNHMKM
WEPSAEEIEG EYWRIVVCPS DKVEVDYGAD LDTATFGSGF VKLSSSDGNK QDPYGVSCWN
LNNLPRLPDS VISFEDEDIS GVVVPWLYVG MCFSSFCWHV EDHFLYSLNY MHFGEPKVWY
GVPGGEAVKL EESMRKNLPK LFEEQPDLLH ELVTQLSPSV LKSEGVSVYR AVQKSGEFVL
TLPRAYHSGF NCGFNCAEAV NVAPVDWLPH GQCAAELYRD QHCKTSISHD KLLLKAAKEA
IRQLWMNLLN CKSGKGEYRW LNTCGKDGVL TNAIKTRVKK EGAAWEANVT LKSKKMDKDY
DSNDRECFSC FYDLHLSAVS CQCTPNRFAC LNHMNLLCSC GMDRKITLFR YSMEELNTLV
AALEGDPAAV CCWGQDHLGL VCQSGSLKHR KMDSCKSTEF SGLAIDANLV SGFGGNQNQC
DDLQKPAGFQ QGKGVQNNCL NLNIEDPPCS SRIKEPSRHQ VEPLDYGMVM IGKKWFNNQA
IFPKGFRSRV TFYNIQDPTA WCFYVSEVLD AGPLGPLFKV TLEQVSDEIE ALDPHHQCLD
YWLSKAASPA KELPSDSTNT PVTLEKLPKK AKLPDGQKLT TTK
//
