ID A1B3T4_PARDP Unreviewed; 728 AA.
AC A1B3T4;
DT 23-JAN-2007, integrated into UniProtKB/TrEMBL.
DT 23-JAN-2007, sequence version 1.
DT 27-MAR-2024, entry version 100.
DE SubName: Full=RNA polymerase, sigma 32 subunit, RpoH {ECO:0000313|EMBL:ABL70178.1};
GN OrderedLocusNames=Pden_2086 {ECO:0000313|EMBL:ABL70178.1};
OS Paracoccus denitrificans (strain Pd 1222).
OC Bacteria; Pseudomonadota; Alphaproteobacteria; Rhodobacterales;
OC Paracoccaceae; Paracoccus.
OX NCBI_TaxID=318586 {ECO:0000313|EMBL:ABL70178.1, ECO:0000313|Proteomes:UP000000361};
RN [1] {ECO:0000313|Proteomes:UP000000361}
RP NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC STRAIN=Pd 1222 {ECO:0000313|Proteomes:UP000000361};
RA Copeland A., Lucas S., Lapidus A., Barry K., Detter J.C.,
RA Glavina del Rio T., Hammon N., Israni S., Dalin E., Tice H., Pitluck S.,
RA Munk A.C., Brettin T., Bruce D., Han C., Tapia R., Gilna P., Schmutz J.,
RA Larimer F., Land M., Hauser L., Kyrpides N., Lykidis A., Spiro S.,
RA Richardson D.J., Moir J.W.B., Ferguson S.J., van Spanning R.J.M.,
RA Richardson P.;
RT "Complete sequence of chromosome 1 of Paracoccus denitrificans PD1222.";
RL Submitted (DEC-2006) to the EMBL/GenBank/DDBJ databases.
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DR EMBL; CP000489; ABL70178.1; -; Genomic_DNA.
DR RefSeq; WP_011748373.1; NC_008686.1.
DR AlphaFoldDB; A1B3T4; -.
DR STRING; 318586.Pden_2086; -.
DR EnsemblBacteria; ABL70178; ABL70178; Pden_2086.
DR GeneID; 75501568; -.
DR KEGG; pde:Pden_2086; -.
DR eggNOG; COG0568; Bacteria.
DR eggNOG; COG0666; Bacteria.
DR HOGENOM; CLU_384878_0_0_5; -.
DR OrthoDB; 8434131at2; -.
DR Proteomes; UP000000361; Chromosome 1.
DR GO; GO:0003677; F:DNA binding; IEA:UniProtKB-KW.
DR GO; GO:0016987; F:sigma factor activity; IEA:UniProtKB-KW.
DR GO; GO:0006352; P:DNA-templated transcription initiation; IEA:InterPro.
DR CDD; cd06171; Sigma70_r4; 1.
DR Gene3D; 1.20.120.1810; -; 1.
DR Gene3D; 1.25.40.20; Ankyrin repeat-containing domain; 1.
DR Gene3D; 1.10.10.10; Winged helix-like DNA-binding domain superfamily/Winged helix DNA-binding domain; 2.
DR InterPro; IPR002110; Ankyrin_rpt.
DR InterPro; IPR036770; Ankyrin_rpt-contain_sf.
DR InterPro; IPR014284; RNA_pol_sigma-70_dom.
DR InterPro; IPR000943; RNA_pol_sigma70.
DR InterPro; IPR007627; RNA_pol_sigma70_r2.
DR InterPro; IPR007630; RNA_pol_sigma70_r4.
DR InterPro; IPR013325; RNA_pol_sigma_r2.
DR InterPro; IPR013324; RNA_pol_sigma_r3/r4-like.
DR InterPro; IPR036388; WH-like_DNA-bd_sf.
DR NCBIfam; TIGR02937; sigma70-ECF; 1.
DR PANTHER; PTHR30603; RNA POLYMERASE SIGMA FACTOR RPO; 1.
DR PANTHER; PTHR30603:SF47; RNA POLYMERASE SIGMA FACTOR SIGF, CHLOROPLASTIC; 1.
DR Pfam; PF00023; Ank; 1.
DR Pfam; PF04542; Sigma70_r2; 1.
DR Pfam; PF04545; Sigma70_r4; 1.
DR PRINTS; PR00046; SIGMA70FCT.
DR SMART; SM00248; ANK; 1.
DR SUPFAM; SSF48403; Ankyrin repeat; 1.
DR SUPFAM; SSF88946; Sigma2 domain of RNA polymerase sigma factors; 1.
DR SUPFAM; SSF88659; Sigma3 and sigma4 domains of RNA polymerase sigma factors; 2.
DR PROSITE; PS50297; ANK_REP_REGION; 1.
DR PROSITE; PS50088; ANK_REPEAT; 1.
DR PROSITE; PS00716; SIGMA70_2; 1.
PE 4: Predicted;
KW ANK repeat {ECO:0000256|PROSITE-ProRule:PRU00023};
KW DNA-binding {ECO:0000256|ARBA:ARBA00023125};
KW Reference proteome {ECO:0000313|Proteomes:UP000000361};
KW Sigma factor {ECO:0000256|ARBA:ARBA00023082};
KW Transcription {ECO:0000256|ARBA:ARBA00023163};
KW Transcription regulation {ECO:0000256|ARBA:ARBA00023015}.
FT REPEAT 57..89
FT /note="ANK"
FT /evidence="ECO:0000256|PROSITE-ProRule:PRU00023"
FT DOMAIN 687..713
FT /note="RNA polymerase sigma-70"
FT /evidence="ECO:0000259|PROSITE:PS00716"
SQ SEQUENCE 728 AA; 80796 MW; 3D34ABDBB721D54E CRC64;
MKIMDRLSRI FGSRDQATSE PESHVLGPFE IRLIAEGKLE RLADFAASSR LHAADPKGDT
PLHLAARMGN LAVCDLFIRS GADPGALNHD RQTPADVAFA EGHGLAAQLL SSLVAGSPET
ETETVGEREV SLVVEDVVTG PDGVPEHRVA VSQETEPTDR TDDLDDLLTF EAEAEPEEFF
DQYAGDTASG TFVALISSSP VVSDNEDGDW DLDLSAAPIA GEGIGSSAAV TADHGAENDF
LKVRNRGRQS VKRAVVQTGT RMSIDPELCF TWAEEILAKG RCSLDDIDRL VAHCEGNGDL
EELRINLQRT LEAAGFYLTQ ATGHDADLWD AVSDTSSDDL ADAIEAALTR RTRLPGTQRF
VMDKSEERQL LEPMMRAKQE LQLGILASET AVETILDVME SIRDGSRDPG SVSLRTIIPS
RPGHAETSEV MAAADTLRSW HTTGRVMDGK RRREALAALE ALDLSLAFHK ELVRTLEQLP
ACQAEASQLE AELLLSESAT EHLIREHLPY VRRFASRNVE EGEDPEDVFQ VAFMGLQRST
RRFDPERGYR FLIYATYWMR QAITRWRSDE GAAIRIPVHR NEKITKLDRA LERLDVRVGG
AVSDLELAKE LEWTIDEVTQ FRSIPREAEY PESLDDWDDL LPEPSGVDVF DEAETERIVT
DALADLPERQ ADVIRMRFGI GRDSDMTLEE IGQIYGVTRE RIRQIEAKGL DRLSHPGRKR
RLQELLGL
//
